Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7343 132 9e-26 >seq7343 Length=933009 Score = 132 bits (146), Expect = 9e-26 Identities = 466/728 (64%), Gaps = 9/728 (1%) Strand=Plus/Plus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT-GTGCGAGAGATT 25655 ||| |||| || || ||||| |||||||| || |||||||| ||||| ||| || |||| Sbjct 374551 GTGCTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTG-GAACGATT 374609 Query 25656 CACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || | ||||||||| ||| | |||| | |||||||| || || || || ||||||| Sbjct 374610 CAGCCAGGAAGTGCAAGTAACCG-AGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCG 374668 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 ||||| | |||||||| |||| || ||| | ||| ||||| | || | Sbjct 374669 AAAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTTC 374728 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCG-AGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 ||| | | ||||| || || | | ||| | ||| | | | |||||| ||| Sbjct 374729 AGAAAAGTTTCTTGTTTAACGCAATTGAAACAC-TTCCCTGTGTAAGGAGGAAAGCGGAC 374787 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| | |||||||||| | | ||| | || ||||| ||| | | || || || Sbjct 374788 TGGGCGCTTAAGTGGATCAGCTCCAAGACGTCCACATTTGGAGAGAGAATCGTCGCTTTC 374847 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| || || || |||||| || ||||| | ||||||||||| ||| | Sbjct 374848 GCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGAAA 374907 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||||| ||| ||||| || || || ||| ||| ||||| || | Sbjct 374908 CGCGGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGATTG 374967 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 || | || |||||||| | || | | | | | | | || ||||| || |||| Sbjct 374968 CATTGTGACTTTGCCTGTTTACTATTCTC---CTATCTCGTTCAAAAACCCTCCAAAGAA 375024 Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | || | || || ||| || || | ||||| ||||||||| Sbjct 375025 AGAGTGACGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAGTTTCTGTCGGATGCA 375084 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | || |||||| || |||||| |||| ||||| || | |||| Sbjct 375085 CTGCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAGTACATAGAATTTGTG 375144 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 || |||| ||||| | || || | | | || | | |||| |||||| Sbjct 375145 GCTGACCGACTGCTAATGGAACTCGGTTGTGAAAAGGTTTATAATGTCACTAATCCGTTC 375204 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 || |||||| | ||||| || || ||||||||||| || ||||||| ||||||| Sbjct 375205 GATTTTATGTCGATAATATCTACAGAGGGCAAGACCAACTTTTTCGAAAAGAAGGTCGGC 375264 Query 26314 GACTATCA 26321 || || || Sbjct 375265 GAATACCA 375272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928749732734720