Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019517.1 Length=136947 Score E Sequences producing significant alignments: (Bits) Value seq2064 102 7e-17 >seq2064 Length=2520 Score = 102 bits (112), Expect = 7e-17 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 132678 TATAATAGCGAAAGCCCCCGCCACCGTGCCAGTTTACAGATTTAGAAATACCACTTTGAT 132737 |||| ||| ||| || || ||||| ||||| || |||| || ||||||| ||| | Sbjct 582 TATAGAAGCTAAAACCGCCTCCACCTTGCCAATTCACAGTAGATGAGATACCACCTTGCT 641 Query 132738 CTTCGCCATCGATCACTTTTTGCAAG-CGCGGGATGATATGGGTATGACAATGATCACCT 132796 | ||||| || ||||||| |||| || || || |||||||| | ||| || || Sbjct 642 CA---CCATCAATAACTTTTT-CAAGACGAGGAATAATATGGGTCTTTGCATGCTCGCCC 697 Query 132797 AGCTCGACCGAAATCCAACGTCTTTTCATCTTGTGAGCTACAGCAGCAGTAGTTCCTGAA 132856 | || | | ||| | |||||| |||||||||| |||||||| ||||| ||||||||| Sbjct 698 ATTTCAATCCCAATATAGCGTCTTCTCATCTTGTGGGCTACAGCTGCAGTTGTTCCTGAA 757 Query 132857 CCGCCGAACGAATCCAAGACTAAATCCCCTT 132887 || ||| || || | || | ||| |||| Sbjct 758 CCAAGGAAAGAGTCAAGAACAATATCACCTT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438057560219360