Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq3518 518 9e-143 >seq3518 Length=5980 Score = 518 bits (574), Expect = 9e-143 Identities = 832/1188 (70%), Gaps = 29/1188 (2%) Strand=Plus/Minus Query 10435 CCATTACCAAAAGCCAAGCAAAACTATTTAGAGGCCGAAGCAACTCTAAAAGAAGAATTA 10494 ||| |||| |||||||| |||| || ||||| || |||| ||| ||| |||||||| Sbjct 4790 CCACTACCGAAAGCCAAAGAAAAATACTTAGAAGCAGAAGAAACCCTATTTCAAGAATTA 4731 Query 10495 ATCGAGTTGGCCATTGGTTTTGAAAGTAAGTTTCAGCC-GATCCATACCAAACACTGGCG 10553 || |||||||||| | | |||||||| || || |||||| | ||||| Sbjct 4730 GAAGAACATGCCATTGGTTATCGTCGAAAGTTTCAATTTGAATCA-ACCAAAAATTGGCG 4672 Query 10554 CTTTGATTTTCATATAGTGAAATTGCGTTTGCTCATTGAAATTGAGGGTGGTCCCTGGTC 10613 ||||||||| |||| ||||| || | || || ||||||| ||| |||| ||| | Sbjct 4671 GTTTGATTTTTATATTGTGAAGCTGAACCTTCTTATAGAAATTGTGGGCAGTCCATGGGC 4612 Query 10614 TGGTGGGCGTGGTGGAAAGCTGTCAAATAAAGCATGGAGTC--TTAATCGATATGATCAT 10671 | ||| |||||||| || ||| | ||| | | || ||||| ||||||| | Sbjct 4611 GGTTGGTCGTGGTGGGAA------AAAGATAGC--GAATTCATTTAATAAGTATGATCTT 4560 Query 10672 GCTGAAGAGATGGGTTACAAAATAGAGCGCTTTCATCCAGATTCTATTTTGTCGGGATAT 10731 |||||||| ||||| | | | | |||| || | || || ||| ||||| ||| Sbjct 4559 GCTGAAGATCAAGGTTATACATTTGTGCGCCTTGAACCTCATCAGATTGAATCGGGTTAT 4500 Query 10732 GTCATCAACTGGATAAAAAGTGAATTAGCGAGAATTGAAGATGGAGCAGATCAGACCATT 10791 | || |||||||| |||| | |||| |||| | ||||||||||||| |||||||||| Sbjct 4499 GCAATTAACTGGATTCGAAGTCAGTTAGAGAGATTAGAAGATGGAGCAGTTCAGACCATT 4440 Query 10792 TCCTCCAACTGATTTTATGGATCAGGCAGAAGAAGAGGAAGCAATTCGTTTAATACCCGC 10851 || || | ||| | || |||||||| || ||||| ||||| || ||||| ||| || Sbjct 4439 CCCGCCGCCGGATCTGATTGATCAGGCTGAGGAAGAAGAAGCCATACGTTTGGCACCGGC 4380 Query 10852 TCCAGACCTAAAGAAATGGGTTGTGGCCAACTACTTAACGATAGGTGGACCTCTTTATAA 10911 || || || || ||||||| ||| |||| ||||| |||| || || |||| Sbjct 4379 ACCCGAGCTTAAAGAATGGGTCGTGAATAACTGGTTAACTTTAGGCGGTGAACTGCATAA 4320 Query 10912 CCCTGACCATGACCATATTGCTGAGCTGCTTCACGATAATGAAGAATTTTTAGCATTTGC 10971 ||| || ||||| |||||||||||| |||||||||| ||||| || || | |||||||| Sbjct 4319 CCCGGATCATGATCATATTGCTGAGTTGCTTCACGACAATGATGAGTTCCTTGCATTTGC 4260 Query 10972 TTGGGCCTCTTCTGCATATAAAAGTAAGCAAGCTATGGTGTTAGGTCAGTGCGAAAAAGT 11031 ||||| || ||||| | | || || |||||| ||||| ||||| ||||| || Sbjct 4259 CTGGGCTTCATCTGCCGCTCTAGCGAAAAAACGTATGGTATTAGGCCAGTGTGAAAAGGT 4200 Query 11032 CATGTTCAATGTTGGTGGATGGCGTAAGGCCAGACAAGAGCAACAGATGCGTGATTGGTT 11091 |||||| || || ||||| ||| || || | || || ||||||||||| || ||||| Sbjct 4199 CATGTTTAACGTGGGTGGCTGGAAGAAAGCGCGCCAGGAACAACAGATGCGGGACTGGTT 4140 Query 11092 TGGTTTTGTACCTACTTATTTAATAACTGTCGACGCTTCTTTCTGTGAGCGTGCAAACGA 11151 ||| || |||||| ||| | || || || |||||| ||| ||||| | || | || Sbjct 4139 TGGCTTCGTACCTCAATATCTGATTACCGTTGACGCTACTTATTGTGAACAAGCTACAGA 4080 Query 11152 TACAGAGTTCTGTTACTTACTTGAACATGAGCTTTACCACATTGGAGTGATGAGAGACGA 11211 | ||| ||||| | || |||| ||||||||||| |||||||| || | | || || Sbjct 4079 TCGAGACTTCTGCCAGTTGATTGAGCATGAGCTTTATCACATTGGTGTAGAGCGTGATGA 4020 Query 11212 GGACGGAGAAATTGTTTATAGCGATAGTTCTGGTCTTCCTAAGCACTATCTTGCTGGTCA 11271 || || ||||| |||||||||||| ||||| | |||||||| || || ||||| || Sbjct 4019 AGATGGCGAAATCATTTATAGCGATATGACTGGTTTACCTAAGCATTACCTGGCTGGCCA 3960 Query 11272 TGACGTTGAAGAGTTTATTGGCGTAGTTAAACGTTATGGACCAAGCAAAAATGTTAAGCG 11331 || || |||| ||| |||| | |||||| | || || | || ||| || || Sbjct 3959 CGATGTCGAAGTGTTCTTTGGTGAGACTAAACGGTGGGGTGCAGACGAATCTGTAAAACG 3900 Query 11332 ACTTATTGAAGTCGCAAAAAATCCGCCGTTTGTTTC-GAATCTTGATATTTCAAAATGCT 11390 ||| | ||| | || | ||| |||||||||| || ||| | ||||| | || | Sbjct 3899 GCTTCTGGAAATTGCCAGGAATGCGCCGTTTGTATCTGAAAC-AAATATTGCTGCGTGTT 3841 Query 11391 GCGGCAACTGTGTAATCAATTGAGCCTAATGGCTCttttttttGCCCATTTTGTTATACG 11450 | || |||||||| || ||| | |||||||||| | || |||| Sbjct 3840 GTGGTAACTGTGTGAT-------------TGGTTAATTTTTTTGCCTAGTTACCCTTACG 3794 Query 11451 TAGTTATACGATGAGGAAGTTATGGCGACACTAAAAGAGCCTGTGAAAATCTTTATAGTT 11510 || | ||| | | || ||||||| || |||||||||||||| ||||| ||||||||| Sbjct 3793 TACTCTTACAAAGGTGAGTTTATGGCAACCCTAAAAGAGCCTGTAAAAATGTTTATAGTT 3734 Query 11511 CAGTCTCTTGCTTGTCGTGATACACCTCAAGAAGTGGCTGAACTCGTAAAACA-AGAGTT 11569 ||||||||||| || ||| ||||||||| |||| | || |||| | ||| | Sbjct 3733 CAGTCTCTTGCCTGCTTTGAAACACCTCAACAAGTAGTAGATGCTGTAAGGGAGAGA-TA 3675 Query 11570 TGGCGTTGATATAGATCGTGTTCAAGTTGCAACTTATGACCCTACAAA 11617 ||| |||| || |||||| || || || ||||||| || || || Sbjct 3674 TGGGATTGAAATTGATCGTCAGCAGGTAGCCTCTTATGATCCAACCAA 3627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145029097087056