Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019713.1 Length=78751 Score E Sequences producing significant alignments: (Bits) Value seq2768 206 1e-48 >seq2768 Length=8677 Score = 206 bits (228), Expect = 1e-48 Identities = 461/680 (68%), Gaps = 18/680 (3%) Strand=Plus/Plus Query 52895 CCCTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTAC 52954 |||||||| || ||||| || || | |||||| |||||| | || || || | || ||| Sbjct 1242 CCCTTAGTTACGACCCGAAAAAGTTACTGGAAGGCAGCTATTGCTGAGCTATTAGGCTAC 1301 Query 52955 ATTCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCACTTGGGACGCT 53014 | |||||||| || ||| | | |||||| | || | |||||| | || Sbjct 1302 TTGCGTGGATATGACAATGCTGCTCAGTTCCGAGCCATTGGCTGTAATACTTGGAATGCA 1361 Query 53015 AACGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATG 53074 || || ||| | |||| ||||||| | |||||| || || || | || | ||| Sbjct 1362 AATGCTAACGAAAATGGAGCTTGGTTAGCTAACCCTTATCGTAAAGGTGAAGATGATATG 1421 Query 53075 GGGCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTG--- 53131 ||||| || ||||| || || || || |||| ||| | || || || | | Sbjct 1422 GGGCGAGTATACGGAGTCCAAGGGCGCCATTGGCGTAACTCTGAAGG---TAAAGAGTTT 1478 Query 53132 GACCAGCTCAAGAAGATTGTGGATAATCTTACTAAC-GGTATCGACGACCGTGGGGAGAT 53190 |||||||| ||||| ||| | ||||| || ||||| || || ||||| || || Sbjct 1479 GACCAGCTTCGTAAGATCTATGATGA-CTTACGAAAAGGTATTGATGATCGTGGTGAAAT 1537 Query 53191 CCTGAACTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGCATGTACAG 53250 |||| ||||| ||||| || ||||| | ||||| |||||||| || || ||| | | Sbjct 1538 TCTGACTTTCTATAACCCAGGGGAGTTTGATATGGGTTGCCTACGACCTTGTATGCATAC 1597 Query 53251 CCACCACTTCTCACTGCTAGGAGACACCCTGTATCTCAACAGCA-CACAACGCTCTTGTG 53309 || |||||| || |||| || || || || || |||| || ||||||| || |||| Sbjct 1598 TCATACCTTCTCTTTGGTAGGGGATACACTTTA-CTTAACATCATCACAACGTTCGTGTG 1656 Query 53310 ATGTACCTTTGGGTCTGAACTTCAACATGGTTCAGGTGT--ACG-TGTTCCTAGCGATCA 53366 ||||||||||||| | || || ||| ||||||| | || |||| ||| | | Sbjct 1657 ATGTACCTTTGGGCCAAAATTTTAACCAAATTCAGGTTTTTACTCTGTT---AGCTCTGA 1713 Query 53367 TGGCTCAAATCACCGGGCACAAGATGGGCACCGCGCACCACAAGATCGTGAACGCTCATA 53426 |||||||||| || || || ||| || | || | |||||||| ||||| || |||| Sbjct 1714 TGGCTCAAATTACAGGACATAAGGCTGGAAAGGCTTATCACAAGATTGTGAATGCGCATA 1773 Query 53427 TCTACGAAGACCAGATAGATCTCATGCGCGACGTACAGTTAACCCGAGAGCCGCTAGAC- 53485 | || || || ||| |||| |||||||| || || ||| | | || || || || | Sbjct 1774 TTTATGAGGATCAGTTAGAACTCATGCGTGATGTTCAGCTTAAACGTGAACC-TTATCCT 1832 Query 53486 CCACCCGTGTTGTGGATCAACCCGGACATCAAGACACTAGAAGACTTGGAGACTTGGGTA 53545 | || | |||||||| || || || || || ||||| | || || ||||| Sbjct 1833 GCGCCAAAACTCCATATCAACCCTGAAATTAAAACGCTTGAAGATATTGAAACATGGGTG 1892 Query 53546 ACACTGGACGACTTTGATGT 53565 ||| | || |||||||| || Sbjct 1893 ACATTAGATGACTTTGAAGT 1912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251853264739616