Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6955 118 9e-22 >seq6955 Length=469295 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||||||||| || |||||||| || ||| |||||||||| Sbjct 94184 ATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCA 94243 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 94244 GACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 94303 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || || || || || || |||||||||||| ||| | |||| || ||| Sbjct 94304 CAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAAC 94363 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| |||||||| ||| |||| || | | |||||||||| Sbjct 94364 ATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGGGAT 94413 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || ||||||||||| ||| || ||||| Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || ||| |||||||| ||| | ||| ||| || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| || || || || |||||||||||||| |||| || | ||||| || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| ||||| ||| |||| | || || |||| || || Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGAAT 95325 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| | || || ||||| ||||| ||| ||||| || Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||| ||| ||||| || ||| | || ||| || Sbjct 95839 TGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCA 95898 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||||||||| || || || |||||||||||||||||| | | |||| | |||||| Sbjct 95899 ACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTAT--CAGATTAT 95956 Query 28731 AACATTCAAAAAGAATCTACT 28751 ||||| ||||||||||| ||| Sbjct 95957 AACATCCAAAAAGAATCCACT 95977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| ||||| || ||||| ||||| ||| |||||| || Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||| || ||| ||||| || || | ||| ||| || Sbjct 94927 AGACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 94986 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || || || ||||| ||| ||| | | || || || Sbjct 94987 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAA 95046 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || || ||| |||| |||| || ||||| | ||||| || Sbjct 95047 CATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGGAAT 95097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | ||| ||| ||||| || | || || || |||||||| |||||| Sbjct 94505 GACAAGGAAGGAATTCCCCCAGACCAACAACGATTGATTTTCGCTGGCAAACAGTTGGAA 94564 Query 28707 GATT--CTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTAT 28764 ||| | | |||| | ||||||||||| ||||||||||| |||||||| |||| | Sbjct 94565 GATGGCCGCACCCTAT--CAGATTATAACATCCAAAAAGAATCCACTCTGCATTTGGTGT 94622 Query 28765 TAAGATTACGAGGAGGGAT 28783 | ||||| |||| || || Sbjct 94623 TGAGATTGAGAGGTGGAAT 94641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || ||||| ||||| ||| ||||| || Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 28613 AGAGACGGTGGCCGAT-CTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | |||| || | || ||||| || ||| | || ||| | Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGATTC-AGGACAAGGAAGGAATTCCTCCAGACC 94757 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||||| | || ||||| |||||||| || |||||| || || | || || | Sbjct 94758 AACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACA 94817 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || |||||||| ||| | || |||| || ||| | ||||||| || Sbjct 94818 ACATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGGAAT 94869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || || ||||| || || ||| |||||| || Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | || || ||| |||||||| || | || ||| || Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || || || ||||||||||||||||| ||| | | ||||| || Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAA 95730 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| ||||| ||| |||| | || || ||||||| || Sbjct 95731 CATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGGAAT 95781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425362348323252