Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7149 111 2e-19 >seq7149 Length=218332 Score = 111 bits (122), Expect = 2e-19 Identities = 305/461 (66%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 |||| |||||||| || || || ||||| |||||| |||| ||||| ||| || | || | Sbjct 123570 TGGCCCCAATGCCCACGGCTTCAACCGCCCAAATCCTGGGAAATAACGAAAGCGTCGAGC 123629 Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628 | ||||| | ||||| ||| | ||| ||| | || |||||| | ||||| Sbjct 123630 CGTACACTAGTAACATTTACACTCGGAGAGTCCTGTCCGGGGAGTTTCAAGTGGTCAATC 123689 Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 76688 |||| || |||| ||| | | | | || || ||| | | |||||| | | Sbjct 123690 AGCATCTTCTCAAGGACTTGACCGAAAGAGGACTGTGGGACGACACGATGAAGAACCAA- 123748 Query 76689 TGGTGAAAGCGGGT---GGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGA 76745 || | ||| | || || || ||||| ||| | || ||||| ||||| | ||| Sbjct 123749 --GTCATAGCCAATCACGGCTCGATACAAAACATCCCCGACATCCCTGATGACTTGAAGG 123806 Query 76746 ATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805 ||||| || ||||||||||| | |||| || | || |||||||| |||| Sbjct 123807 CAATCTACAAGACGGTGTGGGAAATTTCGCAAAAAGTCATCCTCGATATGGCCGCGGATC 123866 Query 76806 GTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTATTCA-TGGAAAGTCCAACGAT 76863 | || ||| || || || ||||| |||||| |||| | || || ||| ||| | | Sbjct 123867 GCGG-CGCATTTATCGACCAAAGCCAAAGTTTGAACATCCACATTGAAAAAGCCAGCTAC 123925 Query 76864 GTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 | | || || || ||||| | |||| ||||| |||| || |||||||||||||| Sbjct 123926 G-GCGTTCTGTCCTCGATGCACTTTTACGGTTGGAAGAAGGGCCTGAAAACCGGAATGTA 123984 Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||| | || | ||| || ||| || || ||||||| Sbjct 123985 TTATTTGAGAACCAAGCCGGCCGCCAATCCCATCCAGTTCA 124025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596508541101440