Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6955 152 9e-32 >seq6955 Length=469295 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||||| || | |||| ||| || || | ||||| || || Sbjct 94875 ATTTGCATTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTG 94816 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| ||||| ||||| |||||||||||||| |||||||| Sbjct 94815 TAGTCAGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGG 94756 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| || || || || |||| ||| | |||| ||| ||||| || Sbjct 94755 TCTGGAGGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAT 94696 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| || || || ||||| || || || ||||||||||| ||||||||| Sbjct 94695 GGTTCGACTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| | || |||| || | || | || || || || Sbjct 95331 ATTTGCATTCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTG 95272 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || |||| || || ||||||||||| || ||||| | ||||||||| Sbjct 95271 TAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGG 95212 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || || |||| ||| | |||| ||||||||| ||| Sbjct 95211 TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAA 95152 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| || || || ||||| || || || ||||| ||||| ||||||||| Sbjct 95151 GGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||| | |||| ||||| || | ||||| || || Sbjct 94648 AATTTGCATTCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTT 94589 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || |||| || | ||| || || ||||| || || ||||| |||| ||||| Sbjct 94588 ATAATCTGATAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTG 94529 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||| || ||||| || |||| ||| | || |||||| || || Sbjct 94528 GTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGA 94469 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || |||||||| || || | || || || || || ||||| Sbjct 94468 TGGTTCAACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||| || | |||| || | |||| |||||| || || |||||| Sbjct 94413 ATCCCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCG 94354 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| ||||| || ||||| | | ||| || || || Sbjct 94353 GAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGG 94294 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| || || || |||| || Sbjct 94293 GGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCC 94234 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || |||| ||||| || || || ||||| Sbjct 94233 ACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899562320372160