Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7343 176 7e-39 seq6955 132 7e-26 seq5761 87.8 3e-12 >seq7343 Length=933009 Score = 176 bits (194), Expect = 7e-39 Identities = 563/874 (64%), Gaps = 9/874 (1%) Strand=Plus/Minus Query 17862 CTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921 |||| | |||||| ||||| || || ||||| || || ||||| || || ||||||| Sbjct 375277 CTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGATATTA 375218 Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATA 17981 ||||||||| || ||||||||| |||||| ||||| | ||| || Sbjct 375217 TCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGAGTTCCATTA 375158 Query 17982 ATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA 18041 | || || || |||||||| | || || |||| | | ||| ||||| || | | Sbjct 375157 GCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATCCCGATAA 375098 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 | || | ||| || ||||| | ||| || | || || |||| | ||| || | Sbjct 375097 GACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCTCGAATAA 375038 Query 18102 TGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACG 18161 || | || || ||| | ||| | || | ||| | ||| |||||| | Sbjct 375037 TGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGA---GATAGGAGAATAGTAAACAGG 374981 Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 |||| ||| || || ||||| |||||||| || | ||| || ||| || | |||| Sbjct 374980 CAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCCGG 374921 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | ||| || ||||| || ||||| || || || | ||| || ||||| | Sbjct 374920 GCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAATATTC 374861 Query 18282 CCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCC 18341 | || || ||||| || | | ||| || |||| || | | ||| |||| Sbjct 374860 CTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAGCTGATCC 374801 Query 18342 ATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 | || | ||||| || ||| | ||| || | | || || || ||||||| Sbjct 374800 ACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCGTTAAACA 374741 Query 18402 AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAG 18461 | | ||| | | ||| | || || || || || | || |||||||||| Sbjct 374740 AGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACATTTCAG 374681 Query 18462 AATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA 18521 | || || |||| || ||||| ||||| | ||| || |||||||||||| ||| | Sbjct 374680 AGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTTACTTGCA 374621 Query 18522 ---TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 || ||| |||| ||| || | ||| || || || || || |||| | ||||| Sbjct 374620 CTTCCTGGCT---GAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCTGCGA 374564 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 |||| |||| |||| ||||| || ||||||| | | || || ||||| | || Sbjct 374563 AAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAATGAT 374504 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | | |||| ||||| || |||||||||| |||||||| || | ||| || | |||| Sbjct 374503 CGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTCTTGT 374444 Query 18699 ACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||| | || ||| || ||| || || || Sbjct 374443 ACTTTTCCCAGATGTCTGGATATTGAATGGGGAA 374410 >seq6955 Length=469295 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | ||||||||||| |||||| | |||||||| ||| Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || ||| || || || || |||||||| || || ||||| || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| |||||| || || || || | ||||| | ||||||| || ||||| || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || ||||| || ||| | || || ||||| || Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGG 95322 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| |||||||| ||| | || || ||| || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || ||||| || ||||| || || ||||| ||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||||| || || || ||| | |||||| | | || ||||||||||||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAAC 94591 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||||| ||||| ||||| ||||| || Sbjct 94592 ATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGG 94638 Score = 120 bits (132), Expect = 4e-22 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| ||||||| |||||||||||| | ||||||||| || Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || || || || || || ||||| || |||||||| || Sbjct 95839 TGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCA 95898 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| |||||| || || || || | |||||| | | || |||||||||||| Sbjct 95899 ACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATA- 95957 Query 156002 TATATCCAAAGAG 156014 | ||||||| || Sbjct 95958 -ACATCCAAAAAG 95969 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| |||||||||||||||| || || ||||| ||| || Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||| || || || ||||||||||| |||||||| || Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| || || || || | ||||| | | |||||||| ||||| || Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAA 95730 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || ||||| || ||| | || || ||||| || Sbjct 95731 CATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGG 95778 Score = 107 bits (118), Expect = 3e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| ||||||||||||| || || || ||||| |||| || Sbjct 95323 AATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTC 95382 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || |||||| ||| ||| || ||||| || |||||||| || ||||| || Sbjct 95383 AGATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 95442 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | | || | ||| || |||||| | || ||| | | || | || || || | Sbjct 95443 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACA- 95501 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| || | || ||||| || ||| | || | ||||| || Sbjct 95502 -ACATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGGCTGAGAGGAGG 95550 >seq5761 Length=8615 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||| || || || || | || ||||| || Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCA 158 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| || || || |||||||||||||| || || Sbjct 159 GACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAG 218 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || ||||||||| | |||||| | || |||| || || || Sbjct 219 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAAC 278 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || |||||||| ||| | ||||| ||||| ||| Sbjct 279 ATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGGT 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731797092900800