Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6955 141 2e-28 seq7343 102 2e-16 >seq6955 Length=469295 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || | || || ||||||||||| | ||||| ||| || || ||| Sbjct 94869 ATTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCA 94810 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || || ||||| || ||||| ||||| |||||||| || || Sbjct 94809 GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGA 94750 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || ||| ||||| || | ||| || | ||| Sbjct 94749 GGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCG 94690 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||| ||||| ||||| | ||||| | ||| || |||||| Sbjct 94689 ACTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || || || || || | ||||| |||||| ||| || || || Sbjct 94413 ATCCCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCG 94354 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||||||| || ||||| || || | | ||| || || || Sbjct 94353 GAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGG 94294 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| || | ||||| | ||| Sbjct 94293 GGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCC 94234 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| |||||||||||||| | || |||||||| Sbjct 94233 ACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || |||||||| || ||||| | || ||||||||||| || || || || | ||| Sbjct 95278 GATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCT 95219 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || || ||||||||||| || || || || ||| ||||| |||| Sbjct 95218 CTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGT 95159 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | || ||||| || ||||||||||| ||||| | ||||| | ||| || || Sbjct 95158 ATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTG 95099 Query 192534 CATT 192537 |||| Sbjct 95098 CATT 95095 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| |||||||| |||| || || |||| ||||||||||| || || || Sbjct 95970 TCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAAA 95911 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | ||||||||| || || || |||||||| || || || || || || ||||| Sbjct 95910 ATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATTT 95851 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | ||| || | ||| ||||| || ||||| ||||| ||||| | ||||||| | Sbjct 95850 TCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTTAACA 95791 Query 192526 AATATCTGCATT 192537 || ||||||||| Sbjct 95790 AAAATCTGCATT 95779 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || | ||| || |||| ||||| || || ||||||||||| | | Sbjct 95506 GATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACG 95447 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || ||||| || ||||| || ||| ||| || || || | Sbjct 95446 CTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGT 95387 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| | ||| ||||| | ||| |||||||| ||||| | ||||||| ||| || || Sbjct 95386 ATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTG 95327 Query 192534 CATT 192537 |||| Sbjct 95326 CATT 95323 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| ||||| || || | || ||||||||||| || || || || || ||| Sbjct 95733 ATGTTGTAATCCGATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTC 95674 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || |||||||| || || || ||| ||| ||||| || | Sbjct 95673 TGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTG 95614 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| ||||| | ||| || ||||| ||||| | ||||| | || || ||| Sbjct 95613 TCTGAGGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGC 95554 Query 192535 ATT 192537 ||| Sbjct 95553 ATT 95551 >seq7343 Length=933009 Score = 102 bits (112), Expect = 2e-16 Identities = 380/599 (63%), Gaps = 6/599 (1%) Strand=Plus/Minus Query 49816 ATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 ||| |||||| ||||| ||| ||| || || ||||| || || || | |||||| || Sbjct 374992 ATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAA 374933 Query 49876 AAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAG 49935 | || | || ||||| || || | || |||||||| || || || ||||| || | || Sbjct 374932 ATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAG 374873 Query 49936 AAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT 49995 | || ||||| || |||||| || || || | ||||| ||||||| | | | | Sbjct 374872 AGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCT 374813 Query 49996 C--ATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053 | || || ||| || | ||||| || ||||| | | | | | || | |||| Sbjct 374812 TGGAGCTGAT--CCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTC 374755 Query 50054 TATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAA 50113 || || ||||| || | |||| | | || | | Sbjct 374754 AATTGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCAT 374695 Query 50114 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGC 50173 ||||||||||| || | | ||| || ||||||||||| ||| || ||| || Sbjct 374694 GCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGC 374635 Query 50174 TTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 50232 || | |||| | ||||| ||||||||| || | ||| || ||||| |||| Sbjct 374634 CTCGGT-TACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCAT 374576 Query 50233 CAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAAT 50292 ||||||||||||| || || | || | || || || ||||||| | | | | | Sbjct 374575 CAGATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCT 374516 Query 50293 TTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTA 50352 | | |||| || || || | |||| || |||||||| | |||||||| || ||| Sbjct 374515 TATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTT 374456 Query 50353 CGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGT 50411 | | ||| || ||| ||| | || || || || |||||| || | ||| | ||| Sbjct 374455 CCGCTTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAACCGT 374397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984376719433800