Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6955 145 1e-29 seq7453 95.1 2e-14 seq7343 87.8 3e-12 >seq6955 Length=469295 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || || || || || | ||||| |||||| || || || || Sbjct 94413 ATCCCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCG 94354 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || |||||||| || ||||| ||||| | | ||| ||||| || Sbjct 94353 GAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGG 94294 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || |||||| || ||||| || || ||||| | ||| Sbjct 94293 GGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCC 94234 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 94233 ACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| |||| || || ||||||||||| | ||||| || || || || Sbjct 94869 ATTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCA 94810 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || || ||||| || ||||||||||| ||||||||||| || Sbjct 94809 GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGA 94750 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || ||| ||||| || ||||| || | ||| Sbjct 94749 GGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCG 94690 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || ||||| ||||| ||||| | ||||| | || || |||||| Sbjct 94689 ACTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || |||| ||| |||| ||||||||||| || || ||||| | |||| Sbjct 95277 ATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTC 95218 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || ||||||||||| || || || || ||| ||||| |||||| Sbjct 95217 TGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTA 95158 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | || ||||| || ||||||||||| ||||| | ||||| | || || ||| Sbjct 95157 TCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGC 95098 Query 172068 ATT 172070 ||| Sbjct 95097 ATT 95095 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || || || ||||| | ||| | ||||| || ||||||||| Sbjct 94641 ATTCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCT 94582 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || ||||| ||||| ||||| ||||| |||| |||||||| || Sbjct 94581 GATAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGG 94522 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| || || ||||| ||||| | ||| Sbjct 94521 GGAATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCA 94462 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| || || || | ||| |||||||| Sbjct 94461 ACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| ||||||| || |||| ||||||||||| || || ||||| || ||| Sbjct 95733 ATGTTGTAATCCGATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTC 95674 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || || |||||||| || || || ||| ||| ||||| || || Sbjct 95673 TGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTG 95614 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| | ||| || ||||| ||||| | ||||| | ||| || ||| Sbjct 95613 TCTGAGGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGC 95554 Query 172068 ATT 172070 ||| Sbjct 95553 ATT 95551 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||||| | || | || ||||||||||| || || ||||| | |||| Sbjct 95961 ATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAAAATCAGTCTC 95902 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || |||||||| || || || || || || ||||| || ||| Sbjct 95901 TGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATTTTCGATGGTA 95842 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| || ||||| ||||| ||||| | ||||||| || |||||| Sbjct 95841 TCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTTAACAAAAATCTGC 95782 Query 172068 ATT 172070 ||| Sbjct 95781 ATT 95779 >seq7453 Length=213858 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || || ||||| ||||| | ||| || || || || || || |||| ||| | || Sbjct 107679 AACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCT 107738 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||| || || || || || || | | ||| ||||| || || || || |||||||| Sbjct 107739 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 107798 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || ||||| ||| ||||| ||||||||||| | || || || ||||| ||||| Sbjct 107799 TGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTC 107858 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || | || || | ||| |||||||| Sbjct 107859 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq7343 Length=933009 Score = 87.8 bits (96), Expect = 3e-12 Identities = 198/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 ||||||||||| || | | ||| || ||||||||||| ||| || || || || Sbjct 374690 TACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCG 374631 Query 39480 GAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 39538 | |||| | ||||| ||||||||| || | ||| || ||||| |||||||| Sbjct 374630 GT-TACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGA 374572 Query 39539 TGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 39598 ||||||||| || || | |||| || || || ||||||| | | | | || | Sbjct 374571 TGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATT 374512 Query 39599 CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 |||| || || || | |||| || |||||||| | |||||||| || ||| | | Sbjct 374511 CCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGC 374452 Query 39659 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGT 39713 ||| || ||| ||| | || || || || |||||| || | ||| | ||| Sbjct 374451 TTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAACCGT 374397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905043359330400