Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021540.1 Length=69278 Score E Sequences producing significant alignments: (Bits) Value seq2768 100 1e-16 >seq2768 Length=8677 Score = 100 bits (110), Expect = 1e-16 Identities = 227/335 (68%), Gaps = 15/335 (4%) Strand=Plus/Plus Query 11718 TATGATGATTTATCTGCTGGTATTGATGACAGGGGTGAGATTATTACCTTCTGGAAACCA 11777 |||||||| ||| ||||||||||| | ||||| ||| | || |||| || ||| Sbjct 1497 TATGATGACTTACGAAAAGGTATTGATGATCGTGGTGAAATTCTGACTTTCTATAACCCA 1556 Query 11778 GATGACTTCGATAAAGCTTGTCTACGTCCTTGTATGTTCCAACATCAT---TTCACTTTG 11834 | || || |||| | ||| ||||| ||||||||| || |||| ||| ||||| Sbjct 1557 GGGGAGTTTGATATGGGTTGCCTACGACCTTGTATG---CATACTCATACCTTCTCTTTG 1613 Query 11835 ATTGATGACCAACTATCACTT-ACTTCGTATCAGCGTAGTTGTGATGTTCCGTTAGGGCT 11893 | | || ||| | |||| || || | || ||| |||||||| || || || | Sbjct 1614 GTAGGGGATACACT-TTACTTAACATCATCACAACGTTCGTGTGATGTACCTTTGGGCCA 1672 Query 11894 AAACTTTAACATGATTCAAGTATATGTATTCTTGGTTCTAATGGCTCAGATTACAGGTAA 11953 ||| |||||| ||||| || | | | || | ||| |||||||| |||||||| | Sbjct 1673 AAATTTTAACCAAATTCAGGTTTTTACTCTGTTAGCTCTGATGGCTCAAATTACAGGACA 1732 Query 11954 TCAACCATTGG--GTGCTACGCACCATATTGTGAATGCTCATATGTATGAAGACCAAGTA 12011 | | | ||| ||| ||| | ||||||||||| ||||| ||||| || || || Sbjct 1733 TAAGGC--TGGAAAGGCTTATCACAAGATTGTGAATGCGCATATTTATGAGGATCAGTTA 1790 Query 12012 GAGCTAATG---GAAGAACAAGTTAAACGTCAACC 12043 || || ||| || | || |||||||| |||| Sbjct 1791 GAACTCATGCGTGATGTTCAGCTTAAACGTGAACC 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221542689771652