Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7343 98.7 1e-14 >seq7343 Length=933009 Score = 98.7 bits (108), Expect = 1e-14 Identities = 150/209 (72%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| | |||||||| | ||||| ||| || ||| | ||||||||||| | Sbjct 374974 CACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCCGGGCATCA 374915 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCG 869287 |||||| ||||| ||||| ||||| | ||| || ||||| |||||||| || || ||| Sbjct 374914 AGCCGCGTTTCTTAAGCCAGAAGATCGAAGCA-AAGCTGCCAGAGAAAAATATTCCTTCG 374856 Query 869288 ACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCAC 869347 || || || || ||| || | ||| |||| ||| || | || | |||||||| Sbjct 374855 ACAGCTGCGAAAGCGACGATTCTCTCTCCAAA--TGTGGACG-TCTTGGAGCTGATCCAC 374799 Query 869348 TTCATCGCCCAGTCGGCCTTTTTCCTCAC 869376 || | ||||||||| || || |||| || Sbjct 374798 TTAAGCGCCCAGTCCGCTTTCCTCCTTAC 374770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106467254375596