Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6955 145 7e-30 seq7010 140 3e-28 seq5761 134 1e-26 seq6233 122 8e-23 seq1586 122 8e-23 seq7149 118 1e-21 seq7453 113 4e-20 >seq6955 Length=469295 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || | || || |||||||| || || || || ||| | | Sbjct 94411 GATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATC 94470 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | || ||| |||||||| |||||||| || || || | Sbjct 94471 AGACACTATTGAGAACGTTAAAGCCAA-GATTCAAGACAAGGAAGGAATTCCCCCAGACC 94529 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||||| ||||| || || || |||||| |||| ||| | | | | |||||||||| Sbjct 94530 AACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATA 94589 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| ||||| ||||| || || || ||||||||| ||||| | || || Sbjct 94590 ACATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGG 94638 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| ||||||| ||||| ||||| | ||||| ||| || | Sbjct 94868 ATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTCA 94927 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| | || |||||||||||| ||||| || || || || || Sbjct 94928 GACACAATTGAGAACGTTAAGGCGAA-GATCCAAGACAAGGAAGGCATTCCCCCAGACCA 94986 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || || ||| |||||||| | | | || || || || Sbjct 94987 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAA 95046 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || | || ||||||||| ||||| | ||||| Sbjct 95047 CATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGG 95094 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || || || ||||| || || | ||||| |||||| | Sbjct 95324 ATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTCA 95383 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||||||||||| ||||| || || || || || Sbjct 95384 GATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 95443 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||||||| | | | || || || ||| Sbjct 95444 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAAC 95503 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||||||||| || || ||||||||| Sbjct 95504 ATCCAAAAGGAATCCACCCTTCACTTGGTG 95533 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || ||||||||||| || ||||| ||| | | Sbjct 95780 ATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATCT 95839 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||| ||||| |||||||| ||||| || ||| Sbjct 95840 GATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCAA 95899 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || ||||| |||| ||| | | | | |||||||||||| Sbjct 95900 CAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAAC 95959 Query 24884 ATTCAAAAGGAATCGAC 24900 || ||||| ||||| || Sbjct 95960 ATCCAAAAAGAATCCAC 95976 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| ||||| || ||||| || | | Sbjct 95096 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTCT 95155 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||||| |||||||||||||| || || || ||| Sbjct 95156 GATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAA 95215 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || ||||| |||| || ||| |||| ||||| ||| Sbjct 95216 CAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAAC 95275 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || ||||||||| Sbjct 95276 ATCCAGAAGGAATCCACTCTTCACTTGGTG 95305 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || |||||||| || | ||||| ||| || | Sbjct 95552 ATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCA 95611 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || ||||| || || Sbjct 95612 GACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 95671 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || ||||| |||| || | | | || ||||| ||| Sbjct 95672 CAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAAC 95731 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || ||||||||| | | ||| | ||||| Sbjct 95732 ATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGG 95778 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| |||| || ||||| || || | ||||| ||| | | Sbjct 94183 GATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTC 94242 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || || | ||| | ||| ||||| |||||||||||||| || || || | Sbjct 94243 AGACACAATCGAGAATGTTAAGGCTAAA-ATCCAGGACAAAGAAGGAATCCCCCCAGACC 94301 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| | || || || || || || |||| ||| | | | || || || | Sbjct 94302 AGCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACA 94361 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || || || || || || |||||||| ||||| || | ||||| Sbjct 94362 ACATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 >seq7010 Length=35453 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | ||||| || || ||||| || || || || || || || ||| Sbjct 8909 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCC 8851 Query 24761 ACC-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||||| | |||| |||||| || || || ||||| ||||| ||||||||||| Sbjct 8850 ATCAGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGA 8791 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| || ||||||||||| || || || ||| |||| ||| | | | | || || || Sbjct 8790 TCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTA 8731 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || || ||||||||| | ||||| | ||||| Sbjct 8730 CAACATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGG 8680 >seq5761 Length=8615 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | ||||| || || ||||| || || || || || || || ||| Sbjct 96 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCC 154 Query 24761 ACC-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||||| | |||| |||||| || || || ||||| ||||| ||||||||||| Sbjct 155 ATCAGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGA 214 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| || ||||||||||| || || || ||| |||| ||| | | | | || || || Sbjct 215 TCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTA 274 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || || || |||||| | ||||| | ||||| Sbjct 275 CAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGG 325 >seq6233 Length=1575 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA- 24761 |||||||||||| | || || || || || || || || || || || || | ||||| Sbjct 413 GATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCG-AGCCAT 471 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || || | |||| || ||| || ||||| |||||||| || || |||||||| | Sbjct 472 CAGATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACC 531 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || ||||||| ||||| || |||||||| ||| | | |||| || |||| Sbjct 532 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATA 591 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||| || ||||| || || | || ||||||||| | ||| | ||||||| Sbjct 592 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 642 >seq1586 Length=2413 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA- 24761 |||||||||||| | || || || || || || || || || || || || | ||||| Sbjct 1851 GATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCG-AGCCAT 1909 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || || | |||| || ||| || ||||| |||||||| || || |||||||| | Sbjct 1910 CAGATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACC 1969 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || ||||||| ||||| || |||||||| ||| | | |||| || |||| Sbjct 1970 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATA 2029 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||| || ||||| || || | || ||||||||| | ||| | ||||||| Sbjct 2030 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 2080 >seq7149 Length=218332 Score = 118 bits (130), Expect = 1e-21 Identities = 230/332 (69%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 139666 TGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGT 139724 |||||||| |||||||| || ||| | |||||| || ||| ||| || | |||| | Sbjct 122302 TGTACATTTATGCCGATGCCTCCGGCGCTTTTGGAAAT--AAAGGCACATTGAGTAAGG- 122246 Query 139725 CTCGTATATA---CCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAG 139781 | ||| || | |||| |||||||| || ||||| | | ||| ||||| || || || Sbjct 122245 CACGTGTAGATGCCCTCA-ATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAG 122187 Query 139782 TTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT 139841 ||| ||| |||| |||| |||||||| ||||| ||||||||||| | | | Sbjct 122186 TTGAGGTCTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTC 122127 Query 139842 CGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGA 139901 ||||| || | ||| |||||||| || ||||||| ||| ||||| || || || Sbjct 122126 TGACATGAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGA 122067 Query 139902 GACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA 139961 ||| | ||||| ||| || || || ||| | | | || | ||| || ||||| Sbjct 122066 GACCCTCATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATA 122007 Query 139962 --ACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 ||| |||| ||||| ||| | |||||||| Sbjct 122006 CGACC--TCTCCAGGGTTTTGAATCCAAAGTA 121977 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138151 GATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATT 138210 || ||||| || || |||| |||| || ||||| || || ||||||| |||||||||| Sbjct 124038 GACTTATCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATT 123979 Query 138211 CCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACG-CGTAAGT 138269 || ||||| | || || | ||| |||| | ||| ||||| | || |||| |||| | Sbjct 123978 CCGGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAG-AACGCCGTAGCT 123920 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 | ||| | | ||||| || ||| || || ||||| || ||||| ||||| Sbjct 123919 GGCTTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGC 123860 Query 138330 GGCCATGTTAA--TTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTA 138377 |||||| | | | | ||||| | || |||||||| |||||||| Sbjct 123859 GGCCATATCGAGGATGACTTTTTGC--GAAATTTCCCACACCGTCTTGTA 123812 >seq7453 Length=213858 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA- 24761 |||||||||||| | || || || || || || || || || || || || | ||||| Sbjct 107891 GATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCG-AGCCAT 107833 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || || | |||| || ||| || ||||| || ||||| || || |||||||| | Sbjct 107832 CAGATACTATCGAAAATGTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACC 107773 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || ||||||| ||||| || |||||||| ||| | | |||| || || | Sbjct 107772 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACA 107713 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||| || ||||| || || | || ||||||||| | ||| | ||||||| Sbjct 107712 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 107662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449851552980640