Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6955 122 7e-23 seq7547 93.3 3e-14 seq6624 93.3 3e-14 seq4172 93.3 3e-14 >seq6955 Length=469295 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || ||||||||||| | ||| |||||| Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| ||||| ||||||||||| | ||| || || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| || || ||||| |||| || | | |||| || | |||||||| Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || ||||| || | ||| ||||| | || || |||| |||| Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGAA 95324 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || |||||||||||||||||||| ||||| | ||| ||| || Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || |||||| ||||| |||||| | ||| || || Sbjct 94927 AGACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 94986 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | ||| || || ||| ||||||||| | || | | || ||||| Sbjct 94987 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAA 95046 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || ||||| ||||||| ||| || | || |||| Sbjct 95047 CATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGGAA 95096 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || ||||| || |||||||| || || | || || || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| |||||| ||||| ||||| | ||| || ||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | |||| || || |||||| |||| |||| | | || | | ||||| ||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAAC 94591 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||||||||| || |||| ||||||| ||| || |||| |||| Sbjct 94592 ATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGAA 94640 >seq7547 Length=69688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 ||||| ||||||| |||||| || || || || || |||||| ||| ||| | ||||| Sbjct 47559 GTTTGGGCGCCCAACTCGCAACCAAAATATTTGGTGGGGTAAGTGGGCGGCCTGCCAAGA 47500 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||||| || | ||| | |||||| || || || || || ||||||||||| || || || Sbjct 47499 GCCTTTGCAACTTCAGCCATGTTCACTATCACGGTTTTTATGCCGTTGCCTTTGCCCTCT 47440 Query 34567 ACCT 34570 |||| Sbjct 47439 ACCT 47436 >seq6624 Length=42736 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 ||||| ||||||| |||||| || || || || || |||||| ||| ||| | ||||| Sbjct 1148 GTTTGGGCGCCCAACTCGCAACCAAAATATTTGGTGGGGTAAGTGGGCGGCCTGCCAAGA 1089 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||||| || | ||| | |||||| || || || || || ||||||||||| || || || Sbjct 1088 GCCTTTGCAACTTCAGCCATGTTCACTATCACGGTTTTTATGCCGTTGCCTTTGCCCTCT 1029 Query 34567 ACCT 34570 |||| Sbjct 1028 ACCT 1025 >seq4172 Length=24140 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 ||||| ||||||| |||||| || || || || || |||||| ||| ||| | ||||| Sbjct 1148 GTTTGGGCGCCCAACTCGCAACCAAAATATTTGGTGGGGTAAGTGGGCGGCCTGCCAAGA 1089 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||||| || | ||| | |||||| || || || || || ||||||||||| || || || Sbjct 1088 GCCTTTGCAACTTCAGCCATGTTCACTATCACGGTTTTTATGCCGTTGCCTTTGCCCTCT 1029 Query 34567 ACCT 34570 |||| Sbjct 1028 ACCT 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800402020684