Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq2994 215 8e-51 seq5140 98.7 2e-15 >seq2994 Length=7505 Score = 215 bits (238), Expect = 8e-51 Identities = 229/302 (76%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513 || || || ||||| || || |||||||| || ||||| || || ||| |||| ||| | Sbjct 4482 GTAACGCCTGTCTGACCTTGATATTTACCACCACGATCTTTATATGAGGTTTCACAGACT 4423 Query 35514 TCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGC 35573 || ||| || ||||| ||||| ||||||||||| || || || | |||||| || Sbjct 4422 TCATCAGATTCAAAAAATAGCATTTGCGCCACACCCTCACCTGCATAAATACGCGCAGGA 4363 Query 35574 AGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGC 35633 || ||||| || || ||||| | ||| || || ||||||||||| || || |||||| Sbjct 4362 AGATTGGTCGTATTTGAAAACTCTAAAGTGACGTGTCCTTCCCACTCTGGCTCAAGCGGC 4303 Query 35634 GTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGG 35693 ||||||||||| ||||| ||||| ||||| || || ||||||||| ||||| ||| Sbjct 4302 GTCACGTTGACAATGATGCCACAACGCGCATAAGTTGACTTACCCAAGCACACGGTCAGG 4243 Query 35694 ACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGA 35753 || || || ||||||||||| ||||||| || || |||| ||| || |||||||||| Sbjct 4242 ACATTACGTGGAATGCGGAAATATTCGATGGTACGCGCCAAAGCAAACGAGTTCGGCGGA 4183 Query 35754 AT 35755 || Sbjct 4182 AT 4181 >seq5140 Length=3466 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA- 120285 |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 86 TGCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGAA 27 Query 120286 TCCCTGATGCCGGCACCATAT 120306 ||| || |||||||||||||| Sbjct 26 TCCGTG-TGCCGGCACCATAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825832267415520