Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7343 120 5e-21 >seq7343 Length=933009 Score = 120 bits (132), Expect = 5e-21 Identities = 224/328 (68%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| ||| || ||| ||||||||||| | |||||| ||| Sbjct 374963 CCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCCGGGCATCAAGCCGCGTTTC 374904 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | | || ||||| |||||||| || || ||||| || || || Sbjct 374903 TTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAATATTCCTTCGACAGCTGCGAAA 374844 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 |||||| | ||| |||| || || | |||| | |||||||||| | ||||| Sbjct 374843 GCGACGATTCTCTCTCCAAATGT-----GGACGTCTTGGAGCTGATCCACTTAAGCGCCC 374789 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || || |||| || |||| | || || || ||| ||| | | |||| Sbjct 374788 AGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCGTTAAACAAGAAACTTTTCT 374729 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || || || ||| |||||| || || || | ||| | || ||||| || |||| Sbjct 374728 GAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACATTTCAGAGTGAATATTTT 374669 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||||| || || || ||||| || || Sbjct 374668 CGATGGCTATTTGAAACCCATAGAAACA 374641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915375405094532