Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7319 398 6e-105 seq5749 347 9e-90 seq7320 134 1e-25 seq6348 98.7 7e-15 seq7641 95.1 9e-14 seq7357 95.1 9e-14 >seq7319 Length=1095930 Score = 398 bits (440), Expect = 6e-105 Identities = 970/1457 (67%), Gaps = 21/1457 (1%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| || ||||||||||||||||| | || || |||||||| |||| |||||| || | Sbjct 883832 CACGTTGAGAATACCATTGGCATCTAGGTCGAAAGTGACTTCGATTTTAGGGACTCCACG 883773 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | || || || || || | | || || |||| ||| || ||||| || | Sbjct 883772 AGGGGCTGGAGGAATGCCAGTTAGGTCGAAAGTGCCCAAGAGATTGTTGTCTTTGGTCAT 883713 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || ||||||||| || | |||||| || || | | ||| || || || || || || Sbjct 883712 GGCTCTTTCACCCTCAAAGACTTGGATGGTTACAGCCGGTTGGTTGTCGGAGTAGGTGGT 883653 Query 281611 AAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 ||||| | || | || ||||||||| | | ||||| ||||| || || ||||| | Sbjct 883652 AAATATTTGCGACTGCTTGCAAGGAATTCTGGCATTTCTTTCAATGATCTTCGTCATCAC 883593 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 || || |||||||| | || || || || || || ||||| |||| | | || ||| Sbjct 883592 GCCTCCGGCTGTTTCGATGCCCAGGGATAGTGGCGTAACATCCACTAAAAGTACATCTTG 883533 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 || || ||||| | ||| | || ||| ||||||| || |||||||| || || Sbjct 883532 AATCTTGCTGTCAGTGTCTCCACTCAAAACAGCGGCTTGAACTGCTGCACCATAAGCTAC 883473 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850 ||||||||| ||||||| | | ||| |||| ||| |||||||| || ||| | || Sbjct 883472 AGCTTCATCTGGATTAATACTGAGATTGAGTTGTTTTCCATTGAAGAAGTTTTGCAACAG 883413 Query 281851 TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910 |||| || || ||||| | | |||||||| || | ||||| ||||| | || || Sbjct 883412 TTGTTGTATTTTTGGAATTCTTGTCGATCCTCCCACCAGGACAATGTCATGGA--TG-GA 883356 Query 281911 ---TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 |||||||| ||| | || || | ||||||| ||||| | || |||| || Sbjct 883355 GCCTTTATCCATTTTGGCGTCAGCTAGAGCTTTTTCCACGGGCTGGAGGGTTCCTCTGAA 883296 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCC 282027 ||||| | | |||||||||||| | |||| ||||| || | | || | || Sbjct 883295 TAAGTCGGCATTTAGTTCTTCGAATCTTGCTCGAGTAACTTTGGTGTAGAAGTCGACGCC 883236 Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087 |||||| | || |||| |||||| || | || ||| ||||| || | | || || Sbjct 883235 TTCGAATAGAGCGTCAATTTCAATGGTTGCTTCAGTACTTGAAGAGAGAGTTCTCTTGGC 883176 Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA-ATCTGTTT 282146 ||||| ||| || || ||||| | || ||| ||| | | || || |||| | | Sbjct 883175 GCGTTCTGCTGCCGTTCTCAGTCTCCTCAAAGCTCTTG-GGTTGGAGCGAAGATCTTTCT 883117 Query 282147 TATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAAAATCTTCA 282205 | ||||||||||||| ||||| | || ||| || | | || ||||| ||||| Sbjct 883116 TGAATTTTCTCTTGAATTCTTCGGC-CAAGTGGTTGACTAATCTGTTGTCAAAGTCTTCT 883058 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCAAGA 282262 || ||||| | || | || | || | ||| || | || | ||| || || | Sbjct 883057 CCGCCCAAATGGGTGTCACCAGCTGTGGATCTGACCTCAAACAATGATCCTTCATCGATG 882998 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | | | | ||||| || || || |||| || ||||| || |||||| ||||| Sbjct 882997 GTAAGGATTGAGACATCGAAAGTGCCGCCTCCCAGGTCGAAAATTAGCACATTCTTTTCT 882938 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 | ||| || || || ||||| || || ||||| || || |||||||| || ||| Sbjct 882937 CCCTTCAAGTTCTTGTCCAGTCCATAAGCTAAGGCAGCGGCGGTGGGTTCATTGATGATT 882878 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 |||| |||||| | || || || ||| || ||||| || ||||| | ||| || ||| Sbjct 882877 CTCATAACATTCAATCCTGCTATAACTCCGGCGTCTTTGGTTGCTTGCCGTTGAGAGTCG 882818 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 || |||||||||||||| || || || || ||| | | || ||||| || ||||| Sbjct 882817 TTGAAATATGCAGGAACGGTGATTACTGCGTCTTTAATGGATTGTCCAAGGTA--CGCTT 882760 Query 282503 --GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCT 282560 ||||||| ||||| || |||||| ||| || | || ||| |||| | | | | Sbjct 882759 CCGCTGTTTCCTTCATCTTTGTTAAAACCATGGAGCTGACTTCTTCCGGAGCAAACTTTT 882700 Query 282561 TGGATTCATTTTGATATGAT--ACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 || ||| || | || | |||| | | ||||| | | | | ||||| Sbjct 882699 TGATTTCGCCTT--TGTGCTCGACTTGGATCTTGGGTTTGCCGCAGTCGCTGACCACTTT 882642 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 282678 |||||||| | || || || ||| | | |||| | | | | | ||||| || Sbjct 882641 GAATGGCCAGTGCTTGATGTCCTGTTGGATTTTCGGGTCGTCATACTTGCGTCCAATCAA 882582 Query 282679 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATC 282738 || ||| || ||||||| || |||| ||||| | || |||| | ||||| || || Sbjct 882581 TCTTTTGGCGTCAAAAACGGTGTTGGAAGGATTCATAGCCACTTGGTTCTTGGCAGCGTC 882522 Query 282739 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 282798 |||| ||| | || | || ||||| | |||||| || ||||| || || || || Sbjct 882521 CCCAAGGAGACGCTCAGAGTCCGTAAAGGCAACATAACTGGGTGTTGTTCGGTTTCCCTG 882462 Query 282799 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 282858 || || || || ||||| ||||| |||| ||||| ||||| || || | | || || Sbjct 882461 GTCGTTAGCGATGATTTCCACTTTTCCATGCTGCCAGACACCGACGCAGGAATATGTGGT 882402 Query 282859 TCCTAAATCAATACCAA 282875 || ||||| ||||||| Sbjct 882401 GCCCAAATCGATACCAA 882385 Score = 394 bits (436), Expect = 7e-104 Identities = 971/1459 (67%), Gaps = 19/1459 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || || ||||| || |||| ||| || || ||||| |||| ||| || Sbjct 890845 GCAGAAACATTTAGGATGCCATTAGCGTCCATATCGAAGGTAACTTCGATTTTAGGAACA 890786 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || || || || | | || || |||| ||| || ||||| Sbjct 890785 CCACGAGGGGCCGGAGGAATGCCAGTTAGGTCGAACGTGCCCAAGAGATTGTTGTCTTTG 890726 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||| ||||| || | ||| || || || | | ||| || || || || Sbjct 890725 GTCATGGCTCTTTCGCCCTCAAATACTTGAATGGTTACAGCCGGTTGGTTGTCGGAGTAG 890666 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || ||||| | | || || |||||| | | ||||| || || || || || Sbjct 890665 GTGGTGAACG-TCTGGGTCTGCTTGCATGGAATTCTCGAATTTCTTTCGATGATCTTCGT 890607 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || || |||||||| | ||| | ||| || || | ||||| || || | | Sbjct 890606 CATTACGCCTCCGGCTGTTTCAATACCCAAAGACAGCGGCGCTACATCTACAAGCAACAC 890547 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || |||| || ||||||| ||| | || || ||||| | ||||| ||||| Sbjct 890546 ATCCTGAATCTTCGAGTCAGTTTCTCCATTCAAAACTGCAGCTTGCACGGCAGCCCCATA 890487 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 || ||||| |||||||| || | | |||| ||| || | || || ||| Sbjct 890486 GGCTACAGCCTCATCAGGGTTGATGCTGAGGTTTAACGGTTTGCCGCTAAAGAAGTTTTG 890427 Query 281845 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904 || || ||| | || ||||| | | || ||||| |||| ||||| |||| ||| Sbjct 890426 CAGCAGCTGTTGAATTTTCGGAATCCTGGTAGAGCCTCCCACTAGAACAATGTCATCCAC 890367 Query 281905 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 |||||||| ||| | |||| | | |||||||| || | | | |||| Sbjct 890366 AGAGCCTTTATCCATTTTGGCATCCTTAAGTGCCTTTTCAACCGGCTGTAAAGTTCCTCT 890307 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 282022 |||| || ||| | |||||||||| | |||| | ||| | | || || || Sbjct 890306 GAACAGATCGGAATTCAATTCTTCGAATCTGGCTCGGG--AGATTTTAGTGTAGAAGTCC 890249 Query 282023 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 282082 | |||||||| | || ||||| ||| | || | || || || || | | ||| Sbjct 890248 ACCCCTTCGAATAGAGCATCAATTTCCAGAGTGGCTTCGGTGCTGGAGGACAAAGTTCGT 890189 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--T 282140 || || || ||| |||||| || | ||||| | ||| ||| | ||| | | | | Sbjct 890188 TTTGCCCGCTCAGCTGCTGTTCTCAATCTTCTAATTGCTCTTG--GGTTGCTGCGGAGGT 890131 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 || |||| |||||||| || || || | | | || ||||| || || || | Sbjct 890130 CTTTTTTGAATTTTCTCAAAAATTCATCGGCGAAGTGATTGACTAGACGGTTGTCGAAGT 890071 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTT 282257 |||||||||| | | || | |||| ||| | | |||| | ||| ||| || || | Sbjct 890070 CTTCACCTCCAAGATGGGTGTCGCCTGCCGTCGATTTTACCTCGAATAGTGAACCTTCAT 890011 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| || | | | ||||| ||||| || || | ||| ||||| || || ||| Sbjct 890010 CAATAGTTAGGATGGACACATCGAAAGTTCCGCCTCCAAGATCGAAAATCAGGACGTTCT 889951 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 |||| | | | || || || || ||||| |||| ||||| || || ||||| |||| Sbjct 889950 TTTCGCCCTTTAGATTCTTGTCCAGGCCATAAGCAAGGGCAGCTGCGGTAGGTTCGTTAA 889891 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 ||||||||| ||||| ||||||||||| ||| || |||||||||||||| ||||| | Sbjct 889890 TAATTCTCATTACATTTAGACCAGCAATCACTCCAGCGTCTTTAGTGGCTTGCCTTTGGG 889831 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 ||||||| || || || ||||| |||| ||| |||||| |||| | |||||| ||| | Sbjct 889830 AATCGTTGAAGTAGGCTGGAACGGTAACAACAGCATCTTTTACAGTTGTTCCAAGATACG 889771 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATA 282555 | ||| |||| |||||||| |||||| ||| || |||| ||| | | ||| Sbjct 889770 CCTCTGCAGTTTCCTTCATTTTCGTTAAAACCATGGAGCTGATTTCTTCAGGTGCGAACG 889711 Query 282556 TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 282615 || || | ||| | | | |||| | | |||||| | | || | || Sbjct 889710 TT--TTAGTTTCGCCCTTGTGTTCGACTTGGAGTTTTGGTTTTCCATGGTCGTTGACGAC 889653 Query 282616 TTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAA 282674 |||||| ||||||| ||| |||||| ||| | ||| || |||| || | | |||| Sbjct 889652 TTTAAACGGCCAATGTTTGATATCTTGTTGGA-TCTTGGGATCATCGAATTTGCGTCCAA 889594 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 ||| ||||||||| || || | ||| || | ||| || | ||| |||| | || || | Sbjct 889593 TTAGTCGTTTTGCGTCGAAGACAGTGTTAGATGGGTTCATGGCAACTTGGTTCTTTGCGG 889534 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 | ||||||| ||| | || || |||||||| | |||||| || |||||||| || | Sbjct 889533 CGTCTCCAAGTAGACGCTCGGTGTCTGTAAAAGCAACATAACTGGGGGTTGTGCGGTTTC 889474 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 |||| || || || || ||||| ||||| |||| |||||| ||||| ||||| | | | Sbjct 889473 CTTGGTCGTTGGCGATGATTTCCACTTTTCCATGTTGCCAGACACCAACACACGAATATG 889414 Query 282855 TTGTTCCTAAATCAATACC 282873 | || || ||||||||||| Sbjct 889413 TGGTACCCAAATCAATACC 889395 Score = 307 bits (340), Expect = 8e-78 Identities = 690/1023 (67%), Gaps = 29/1023 (3%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || ||||||||||| ||||||| || || ||||| ||||||| || || ||||| Sbjct 870593 ACGTTCAGAATACCATTTGCATCCAGGTCGAAGGTGACATCAATTTTGGGCACTCCTCTT 870652 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA-TTATTATCTTTAGTGAA 281550 | || || || || || ||| | || ||||||| || | || || ||||| || | Sbjct 870653 GGTGCTGGAGGAATTCCAGTCAAGTCGAAGGTTCCCA-ATAAGTTGTTGTCTTTTGTCAT 870711 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 ||| |||||| || || | ||| || || ||| | | || || || | || ||||| Sbjct 870712 GGTTCTTTCACCTTCAAATACTTGAATGGTTACTGCTGGCTGGTTGTCGGCGTATGTTGT 870771 Query 281611 AAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || |||| |||| | | || |||||| | | ||||| |||||||| || ||||| | Sbjct 870772 GAA-CGTCTGAGATTGTCTGCAGGGAATTCTCGCATTTCTTTCAATAATTTTCGTCATCA 870830 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 || || |||||||| | |||||||| || || || ||||| || || | | | | Sbjct 870831 CGCCTCCTGCTGTTTCGATGCCAAGAGATAGTGGCGTAACATCCACCAGAAGTACGTCCT 870890 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 ||| || ||||||| |||| |||| ||| || |||| || || ||||| || | Sbjct 870891 GAATCTTGCTGTCAGTTTCACCACTTAGAACAGCAGCCTGAACTGCTGCGCCATAAGCTA 870950 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT---TGAAA 281846 |||||||||| ||||||| | | ||| |||| ||| |||||||| | || | | | Sbjct 870951 CAGCTTCATCTGGATTAATACTGAGATTGAGTTGTTTTCCATTGAAGTAGTTTTGTAACA 871010 Query 281847 GAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906 || |||| || || || || | | ||||||||| || || || || || || | | Sbjct 871011 GATGTTGGATT---TTTGGGATTCTTGTTGATCCTCCTACCAAGACGATGTCGTGGA--T 871065 Query 281907 GTGA--TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 | | |||||||| | | ||| | | |||||||||| || | |||| |||| Sbjct 871066 GGAACCTTTATCCATTCGGGCATCGGCCAGAGCTTTTTCAACAGGCTGAAGAGTTCCTCT 871125 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 282024 || ||||| | | | |||||||||| | |||| | | | || | |||| || Sbjct 871126 GAATAAGTCAGCATTCAATTCTTCGAATCTTGCTCGACTGACTTTGGTGTAGAAATCGAT 871185 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 |||||||| | || |||| ||| || || | || ||| ||||| || | | || Sbjct 871186 GCCTTCGAATAGAGCGTCAATTTCGATGGTTGCTTCAGTACTTGAAGACAGAGTTCTCTT 871245 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA-TTGATTCAA-ATCT 282142 || ||||| ||||| ||||||| | | |||| ||| || ||||| || |||| Sbjct 871246 GGCGCGTTCTGCCGCTGTTCTTAGTCGCCTAAGGGCTCTTG--GATTTGATCGAAGATCT 871303 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATG----TTACAAGACGATTATCAAA 282198 | | |||| |||||||| ||||| | ||| | |||| | | || ||||| Sbjct 871304 TTCCTGAATTTCCTCTTGAATTCTTC----CGCCAAGTGGTTTACTAATCTGTTGTCAAA 871359 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATC 282255 ||||| || |||| | || | |||| |||||||| |||| || || ||| || Sbjct 871360 GTCTTCTCCGCCCAGATGGGTGTCACCTGCTGTAGCTCTGACTTCAAATAGTGATCCCTC 871419 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | | ||||| | ||||| || || || |||| || ||||| || ||||| Sbjct 871420 ATCGATGGTCAAAATTGAGACATCGAAAGTGCCGCCTCCCAAGTCGAAAATGAGCACATT 871479 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 ||||| | || || || | |||||| || |||||||| || || |||||||| Sbjct 871480 TCTTTCTCCTTTCAAATTCTTGTCCAAACCATAAGCTAAAGCAGCGGCGGTGGGTTCATT 871539 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 || ||||||| |||||| | || || || ||| || ||||| || ||||| ||||| Sbjct 871540 GATGATTCTCATAACATTCAATCCTGCTATAACTCCGGCGTCTTTGGTTGCTTGCCTTTG 871599 Query 282436 TGA 282438 || Sbjct 871600 AGA 871602 Score = 100 bits (110), Expect = 2e-15 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 ||||||||| || |||| ||||| | || |||| | ||||| || || |||| | Sbjct 871851 CATCAAAAACGGTGTTGGAAGGATTCATAGCCACTTGGTTCTTGGCAGCGTCCCCAAGGA 871910 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 || | || | || ||||| | |||||| || ||||| || || || || || || | Sbjct 871911 GACGCTCAGAGTCCGTAAAGGCAACATAACTGGGTGTTGTTCGGTTTCCCTGGTCGTTAG 871970 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 | || ||||| ||||| |||| ||||| ||||| || ||| | | || || || |||| Sbjct 871971 CGATGATTTCCACTTTTCCATGCTGCCAGACACCAACGCAAGAATACGTCGTGCCCAAAT 872030 Query 282867 CAATACCAATAGC 282879 |||||||||| || Sbjct 872031 CAATACCAATTGC 872043 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748 ||||||| || |||| ||||| | || |||| | ||||| || || |||| ||| Sbjct 878965 TCAAAAACGGTGTTGGAAGGATTCATAGCCACTTGGTTCTTGGCAGCGTCCCCAAGGAGA 879024 Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 | || | || ||||| | |||||| || ||||| || || || || || || || Sbjct 879025 CGCTCAGAGTCCGTAAAGGCAACATAACTGGGTGTTGTTCGGTTTCCCTGGTCGTTAGCG 879084 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || ||||| ||||| |||| ||||| ||||| || ||| | | || || || |||||| Sbjct 879085 ATGATTTCCACTTTTCCATGCTGCCAGACACCAACGCAAGAATACGTCGTGCCCAAATCA 879144 Query 282869 ATACCAATAGC 282879 |||||||| || Sbjct 879145 ATACCAATTGC 879155 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 |||||||| || || ||||| || |||||||| || ||||| || ||| | || || | Sbjct 158063 AAATGTACTCTCATATTGACTGAAGGAGATTCGGCCAAAACGTTGGCTGTTTCCGGGTTG 158122 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 | |||||||||||| |||||||| || || || || | || || |||||| | || || Sbjct 158123 AGTGTTATTGGAAGGGATTATTACGGCGTGTTTCCTTTAAGGGGTAAACTTCTAAACGTC 158182 Query 400414 AGGGATGC 400421 || || || Sbjct 158183 AGAGAAGC 158190 >seq5749 Length=3311 Score = 347 bits (384), Expect = 9e-90 Identities = 197/200 (99%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1168478 AATCTATGATGCCAGCATGATGTCGGTCTTAAAACGTGCACGCTGTTCTGTCGATAAGGC 1168537 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1560 AATCTATGATGCCAGCATGATGTCGATCTTAAAACGTGCACGCTGTTCTGTCGATAAGGC 1501 Query 1168538 CAACTTTGAATGTTCAATTGCTGGCGAATAATCTGATTTTTAAAGCAAAAAGCTTAGAGT 1168597 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1500 CAACTTTGAATGTTCAATTGCTGGCGAATAATCTGATTTTTAAAGAAAAAAGCTTAGATT 1441 Query 1168598 GATCTAGGCtttttttATGGCTGAACCAGGTCAGATCTGCCATTGTGCAGCGAATAAAAT 1168657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GATCTAGGCTTTTTTTATGGCTGAACCAGGTCAGATCTGCCATTGTGCAGCGAATAAAAT 1381 Query 1168658 AGCTTAAGCTTGATTAACTA 1168677 |||||||||||||||||||| Sbjct 1380 AGCTTAAGCTTGATTAACTA 1361 >seq7320 Length=937134 Score = 134 bits (148), Expect = 1e-25 Identities = 480/739 (65%), Gaps = 10/739 (1%) Strand=Plus/Plus Query 281582 ACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGT 281640 ||| ||| |||||||| || || || ||||| |||| | | || ||||| || Sbjct 230313 ACTCCAGGCTGATTATCAGAGTAGGTGGTAAAGG-TCTGAGTCTGCTTGGTGGGAATGGT 230371 Query 281641 TGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAG 281700 ||||| || | ||| | |||||| | ||| || || || || | || | || | Sbjct 230372 GGTGTTCCTCTTAATGAGGGCGGTCATCACACCTCCGGCAGTCTCAATGCCCAACGACAA 230431 Query 281701 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAAT 281760 ||||| ||||| | || | | || ||| | | ||| | | |||| | ||| Sbjct 230432 GGGAGTAACATCCAGAAGAAGCAAATCTTGCACCTCCTCAGACTTGTCACCATGTAAAAT 230491 Query 281761 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 281820 || ||||| | || |||||||| |||||||| || ||||| || | | | || || Sbjct 230492 GGCAGCTTGCACGGCCGCACCATACGCAACAGCCTCGTCAGGGTTGATCGACTTGTTCAG 230551 Query 281821 TTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATC 281879 | || || ||||| || | ||| | || ||| || || |||||||| | || | Sbjct 230552 CTCCTTTCCGTTGAAGAAGTCCTGAAGCAATT-TCTGGACTTTGGGAATACGGGTGGAGC 230610 Query 281880 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTT 281939 |||| ||||| || || || || || || ||||| |||| || | ||| | | | Sbjct 230611 CTCCTACTAACACGATGTCGTGGACTTGGGATTTGTCCATCTTAGCATCGCGAATGGCCT 230670 Query 281940 TTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 281999 ||||||| ||||| | | | |||| || | | | ||||||||| || | Sbjct 230671 TTTCAACAGGTTCCATGGTGGAACGGAACAGATCGGCATTCAATTCTTCGAAACGGGCAC 230730 Query 282000 TAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT 282057 || || || | || || || |||||||| ||||| ||||| | ||| || | | Sbjct 230731 GGGT--GATGGAGGTGTAGAAGTCGATTCCTTCAAACAAGGAATCGATTTCGATGCTGGC 230788 Query 282058 TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA 282117 ||| || |||||||| || | | || || | |||||| || || || || | || | Sbjct 230789 TTGGGTTGAAGAAGACAGAGTCCTCTTCGCCCTTTCACAGGCAGTTCTGAGCCGTCTCAG 230848 Query 282118 GGCTTTTGCTGATTGATTCAAA-TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACC 282176 |||| | || | || | | || |||| || || | |||||| || | ||| | Sbjct 230849 GGCTCTCT-TGTTGGAGGCGAGGTCCTTTTTGTACTTGCGCTTGAATTCCTGCACAAAGT 230907 Query 282177 ATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 282236 | || | | ||||| ||||||||||||||||| | ||| | ||| | |||| Sbjct 230908 GATTGACCATCCTGTTATCGAAATCTTCACCTCCCAAGTGAGTGTCTCCAGCAGTAGACT 230967 Query 282237 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296 |||||| ||| | ||||| |||| || || | | |||||| ||||||||||||| Sbjct 230968 TTACTTCGAAGATACCATCCTCAATAGTTAAGATGGACACATCAAAAGTTCCACCACCCA 231027 Query 282297 TATCAAAAATAAGTACATT 282315 ||| ||||| | ||| || Sbjct 231028 AATCGAAAATCAATACGTT 231046 Score = 104 bits (114), Expect = 2e-16 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||||||||||||||| || || |||||||||||||| || ||||| | ||| Sbjct 231256 TTCTTGTCAAGACCATACGCAATTGCGGCCGCAGTTGGTTCATTGATGATTCTGAGAACC 231315 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | |||||| | || |||| | || || || ||||| | ||| || || || ||||| Sbjct 231316 TGAAGACCTGAGATAGTTCCAGAGTCCTTTGTTGCTTGACGTTGAGAGTCATTGAAATAA 231375 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || || || |||||||| || | || ||| ||| || | ||| || Sbjct 231376 GCTGGCACTGTAATAACAGCGTTGGTGACTGATTTACCTAAATAGGC 231422 >seq6348 Length=1092195 Score = 98.7 bits (108), Expect = 7e-15 Identities = 163/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 282246 AAAGT-CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 ||||| || || |||| || || | | ||||| |||||| || |||| || ||| Sbjct 739242 AAAGTACCTTCATCAATAGCCAGGATGGACACATCGAAGGTTCCGCCTCCCAAGTCGAAA 739301 Query 282305 ATAAGTACATTCATTTCTTTGTCTTG---GTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||| |||| | |||| ||| || || ||||| || || || || || Sbjct 739302 ATCAGCACGTTCTTTTC---GCCTTGCAGGTTCTTGTCCAGACCGTAGGCCAATGCGGCT 739358 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||||||||| || || |||| | || || | ||| ||||| ||| || ||||| Sbjct 739359 GCAGTTGGTTCGTTGATGATTCGAAGCACGTTCAAACCTGCAATCACTCCGGCGTCTTTG 739418 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||||| | ||| || ||||| || || || || || || || || || || Sbjct 739419 GTGGCTTGCCGTTGCGAGTCGTTGAAGTAAGCTGGGACGGTGATGACTGCGTC 739471 >seq7641 Length=1756407 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 |||||| || |||| ||||||||||| ||||||||||| |||||||||||||| || Sbjct 1563937 ACCAGCGATAGTTCCGGCATCTTTAGTAGCTTGTCTTTGGCTGTCGTTAAAATATGCCGG 1563996 Query 282457 AACAGTAATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCA 282515 ||| |||||||||||||| | | |||| |||| ||| || ||||| | |||| Sbjct 1563997 AACGGTAATAACGGCATCAGAAGCACTCTTCCCCAA-ATATGCCTCAGCTGTGTCCTTCA 1564055 Query 282516 TTTTACTTAAAATCATTGA 282534 |||| | |||| ||| || Sbjct 1564056 TTTTCGTCAAAACCATGGA 1564074 >seq7357 Length=1179844 Score = 95.1 bits (104), Expect = 9e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC--TTTGTCTTGGTTTTTATCA 282340 ||| |||||||| | ||||||||| || |||| || |||| || || || || Sbjct 919925 GGTGCCACCACCGAAATCAAAAATCAGCACATAGCGGTCGTTTTGGCTC--TTCTTGTCT 919868 Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 | ||||| |||| ||| || ||||| || || || ||||||| ||||| | ||| Sbjct 919867 AAGCCATATGCAACAGCGGCTGCAGTGGGCTCGTTTATAATTCGTTGAACATCCAAACCT 919808 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 ||||| | ||||| || || |||||||||||||| || || || ||||| || || || Sbjct 919807 GCAATGGTGCCTGCGTCCTTCGTGGCTTGTCTTTGAGAGTCATTGAAATACGCTGGTACG 919748 Query 282461 GTAATAACGGCATCTGTTAC 282480 || | || || | || ||| Sbjct 919747 GTGACGACCGCTTTTGATAC 919728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740228403802488