Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq234 91.5 1e-13 >seq234 Length=6592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 250/377 (66%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 27058 CCAATATTATATGTCTCTCCAG-ATTTGCCTTTAGTTACTACTAGGTGTAATGCCTCTGC 27116 ||||||||||| || || ||| | |||| ||| || ||| | ||| || ||| Sbjct 381 CCAATATTATAAGTTTCACCAACAGCAGCCTC-AGTAACCACTTTATATAAAGCACGTGC 439 Query 27117 GTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATTGG 27176 || || || || ||| ||| || | | ||| | ||||| ||||| ||||| | || Sbjct 440 ATGGTCTTCTACAAATAGCCAATCACGAATTTGGTGTCCATTGCCATATACAGGTAATGC 499 Query 27177 TTTATGCATTAAGAT-ATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATATG 27235 ||| |||| || ||| || || || || || |||||||| |||||| | Sbjct 500 TTTGC-CATTGAGGGCATTCAAAATAATTAATGGAATCAGCTTTTCTGGGAAATGATAAG 558 Query 27236 CTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACG 27295 ||| | || ||||| ||||| |||| ||| || | ||||||||| || ||||| | Sbjct 559 GACCATAGTTGTTTGAGCAATTGGTTAAAACGACAGGTAAACCATAAGTTCGGTGCCATG 618 Query 27296 CTCTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAAG 27355 | | ||||||||||| ||| ||| ||| | |||||| |||||| ||| | Sbjct 619 CACGAACCAAATGATCTGAACTAGCCTTACTTGCTGAATATGGTGAACTTGGAGCATACG 678 Query 27356 GATTCTGTTCTGTAAACGGA----TAATCTCCTTCTTCCAGATCACCATACACTTCATCT 27411 | |||| | | || | | | |||| |||| | |||||||| || ||||| Sbjct 679 G----TGTTGTCTCAAGGAACAAGTCATCTGTACCTTCTAAGTCACCATAAACCTCATCC 734 Query 27412 GTTGAAATATGATGGAA 27428 |||||||| || ||||| Sbjct 735 GTTGAAATGTGGTGGAA 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475381739698560