Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6955 172 1e-37 seq7010 129 1e-24 seq5761 125 1e-23 >seq6955 Length=469295 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| | || ||| || || | ||| ||||||||||| || || || ||||| Sbjct 94866 CCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 94807 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||||| ||||| || ||||| |||| || ||||| |||||||| Sbjct 94806 AATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGA 94747 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || |||||||| ||||| ||||||||||| |||||| ||||| ||| Sbjct 94746 ATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACT 94687 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || ||||| || | || |||||||| || |||||| Sbjct 94686 TCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | || || ||||| ||||| ||||| ||||| || || |||||||| Sbjct 95322 CCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 95263 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| |||||||| | ||||||||| || || || ||||| ||||| ||||| || Sbjct 95262 AAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGA 95203 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || ||||| ||||| ||||||||||| |||||| ||| || ||| Sbjct 95202 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACT 95143 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | || || ||||| || |||||| Sbjct 95142 TCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | || || || |||||||| |||||||| || || |||||||| ||| Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | ||||| ||||| || || | || |||||| ||||| || Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||||||||| ||||| || || ||||| || || ||||| || Sbjct 94518 ATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACC 94459 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| ||||| ||||| || || |||||||| Sbjct 94458 TCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 161 bits (178), Expect = 2e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| |||||||| || || |||||||| ||||| | | || ||||| | |||||| || Sbjct 95977 AGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCC 95918 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 || || || ||||| ||||| |||||||| ||||||||||| || || |||||||| || Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 |||||||| || |||||| ||||| ||||| | || || || ||||| |||| || Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 82793 CTTTACAAATATCTGCATT 82811 || ||||| ||||||||| Sbjct 95797 TTTAACAAAAATCTGCATT 95779 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || ||||| ||||| ||||| |||||||| || ||||| ||| Sbjct 95778 CCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGAT 95719 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||||| | |||||| || || || || | || || || |||||||| Sbjct 95718 AAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGA 95659 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| ||||| ||||| || || || || ||||| ||| Sbjct 95658 ATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACT 95599 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || || || |||| || || || || || |||||| Sbjct 95598 TCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| |||| ||| ||||| |||||||| |||||||| || || || || || Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| | ||| |||||||| || || || | || || ||||| || Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||| || || || || |||||| ||| Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || || || || || || || |||||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | || || || |||| ||| || || || || || || || |||||| Sbjct 95094 CCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAT 95035 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || | || ||||| |||||||| | ||| || || ||||| || Sbjct 95034 AAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGA 94975 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || || ||||| || || ||||| ||| Sbjct 94974 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACT 94915 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| ||||| || || || || || || || |||||| Sbjct 94914 TCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 140 bits (154), Expect = 6e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| | || || ||||| || || ||||| || || || || || || || Sbjct 95550 CCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAA 95491 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | || |||||||||||||| || | || || ||||| || Sbjct 95490 AGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 95431 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTAC 82762 || |||||||| ||||| ||||| ||||| || ||||| || ||||| | ||| ||| || Sbjct 95430 ATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATC-TGAGGCTTCCAC 95372 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||| || || || || |||| || || ||||| || |||||| Sbjct 95371 TTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 >seq7010 Length=35453 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || ||||| || || ||||| ||||| || || || || | Sbjct 8678 TACCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 8737 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||| | || || ||||| ||||| | | || ||||| |||| Sbjct 8738 ATAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAG 8797 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||| |||||||| || ||||| || |||||||||||||| || || || || || | Sbjct 8798 GTATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGA 8857 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | || || || || || ||||| Sbjct 8858 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq5761 Length=8615 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || || || || || ||||| ||||| || || || || | Sbjct 327 TACCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 268 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||| | || || ||||| ||||| | | || ||||| |||| Sbjct 267 ATAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAG 208 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||| |||||||| || ||||| || |||||||||||||| || || || || || | Sbjct 207 GTATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGA 148 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | || || || || || ||||| Sbjct 147 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981724197735732