Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7453 122 8e-23 seq6233 118 1e-21 seq1586 118 1e-21 seq7149 116 4e-21 seq5761 107 2e-18 seq7010 104 2e-17 seq6955 102 8e-17 seq7329 87.8 2e-12 >seq7453 Length=213858 Score = 122 bits (134), Expect = 8e-23 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| || || ||| | | | || || || Sbjct 107685 AAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCA-TCTTCCAG 107743 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||||||||||||||||||||||||| || || || ||| Sbjct 107744 CTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGAT 107803 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | || | || || | ||||| || || | |||| ||| |||| Sbjct 107804 -TTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGC 107862 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| |||||||| Sbjct 107863 CCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq6233 Length=1575 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || || || || || ||| | | | || || || Sbjct 619 AAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCA-TCTTCCAG 561 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||||||||||||||||||||||||| || ||||| ||| Sbjct 560 CTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGAT 501 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | || | || || | ||||| || || | |||| ||| || | Sbjct 500 -TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCC 442 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| |||||||| Sbjct 441 CCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || || || || || ||| | | | || || || Sbjct 2057 AAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCA-TCTTCCAG 1999 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||||||||||||||||||||||||| || ||||| ||| Sbjct 1998 CTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGAT 1939 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | || | || || | ||||| || || | |||| ||| || | Sbjct 1938 -TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCC 1880 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| |||||||| Sbjct 1879 CCGTCAGAGTCTTCACGAAGATCTGCAT 1852 >seq7149 Length=218332 Score = 116 bits (128), Expect = 4e-21 Identities = 312/473 (66%), Gaps = 22/473 (5%) Strand=Plus/Minus Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTT 148584 || || | |||||||||||||| | ||| ||||| || ||||| | ||| ||| || Sbjct 123369 GCTCCTCAGCCAGTTCGCAGCTGGTCTCCAGCGCCCCATAGTACAACGTTTCGAATATCC 123310 Query 148585 GCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 || |||| | || | ||| ||| ||| | ||||| |||| | | || |||| Sbjct 123309 GCTTGTTCAAAAGGGTCGCATCAGGGCTATCGAAGGGCATTCGCATCAAAATGAAGGCGT 123250 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 |||| ||||| || | || | || || |||| ||| ||||| ||| || Sbjct 123249 CGGCCAGGCCTTGGATTCCAATCCCTATAGGCCTGTGCCGCATGTTCGAGTTCTTTGC-- 123192 Query 148705 TCTCGAG---CGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 ||||| ||| || ||| ||| || |||||||| | ||| ||| || || | Sbjct 123191 -CTCGATTACCGGGTAAAAGTTCACGTCAATAATCTTGTCCAAATTCCGCGTGACTACTT 123133 Query 148762 TTGTAATT--------CTGCGCAGCAATTCAAAATCGTACTTGTCATC---TACGATGCA 148810 | || || || | | || |||||| | | ||| | ||| | || Sbjct 123132 TCGTGATGGCCTTTAACTTCTCG--AAGTCAAAACTCTTCCGATCAGCGGATACAAA-CA 123076 Query 148811 TCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 | ||| || || | ||||| |||||||| ||||| | ||||| | | |||| || Sbjct 123075 T--GTTAACCGCCACTGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTC 123018 Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930 ||||| || | ||| |||||||||| || ||| ||||| |||||| || ||| || Sbjct 123017 AACGATTTCCGTGCAAAGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTT 122958 Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 || |||||| ||||| |||||||||||||| || || |||||||| |||| Sbjct 122957 GCGGTTGCAGGCGTCTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTGCG 122905 >seq5761 Length=8615 Score = 107 bits (118), Expect = 2e-18 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | |||||| || ||||| || ||||| ||| || | | ||| || || | Sbjct 304 AAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG--ATAGGGTACGTCCATCTTCCA 247 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || ||| | || | |||||||| |||||||| |||||||||||||| ||| Sbjct 246 ACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTC-CTGA 188 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | || | ||||| | ||||| || || | ||||| ||| || Sbjct 187 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 128 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| |||||||| ||||| Sbjct 127 CCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 104 bits (114), Expect = 2e-17 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 || || | |||||| || ||||| || ||||| ||| || | | ||| || || | Sbjct 8701 AAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG--ATAGGGTACGTCCATCTTCCA 8758 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || ||| | || | |||||||| |||||||| |||||||||||||| ||| Sbjct 8759 ACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTC-CTGA 8817 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | || | ||||| | ||||| || || | ||||| ||| || Sbjct 8818 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 8877 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| |||||||| ||||| Sbjct 8878 CCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq6955 Length=469295 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| | ||| | | | || || | ||||| || Sbjct 94380 GTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCA-TCTTCCAATTGCTTTCC 94322 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || ||||| ||||| ||||| ||| || ||| Sbjct 94321 AGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTGGATTTTAGCCTT 94262 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | || ||||| || | |||| |||||| || || | || Sbjct 94261 AACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTTAATGT 94202 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 94201 TTTCACGAAGATCTGCAT 94184 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| || || || ||||| || | ||| | | | ||||| | Sbjct 95073 AAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCCA-TCCTCCAA 95015 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | | ||||||||| || || |||||||||||||| ||| Sbjct 95014 CTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGAT 94955 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | ||| ||||| || | || | |||||||| Sbjct 94954 CTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAATCGTTTTGCC 94895 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | |||||| ||||| || ||||| Sbjct 94894 GGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || ||||| ||| | ||| | | | ||||| | Sbjct 95529 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCA-TCCTCCAA 95471 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 95470 CTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGAT 95411 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | || | || || | || ||||| || | |||| |||||| | Sbjct 95410 C-TTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTC 95352 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||| || || || ||||| Sbjct 95351 CAGTCAGGGTTTTAACAAAGATTTGCAT 95324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || || || ||||| | ||| | | | || || | Sbjct 94617 AAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCA-TCTTCCAA 94559 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | || || ||||| || || || ||||||||||| || Sbjct 94558 CTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAAT 94499 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||||| ||||| | || || || || | |||| ||||||| Sbjct 94498 CTTG-GCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGTTTTGC 94440 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| || |||||||||||||| Sbjct 94439 CAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || || ||||| | ||| | | | || || | || ||||| Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCA-TCTTCCAATTGTTTGCC 95918 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || | ||| ||||| ||||| || ||||||||||| ||||||| ||| Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | || || || || | || | |||||||| |||||||| Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||||||||| Sbjct 95797 TTTAACAAAAATCTGCAT 95780 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||||| |||||||| || ||||| || || || | | | || || | Sbjct 94845 AAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCA-TCTTCTAA 94787 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || |||| | || ||| ||||| ||||| || ||||||||||| ||| Sbjct 94786 CTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTC-CTGAA 94728 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 || |||| | | | |||| || || | || || || || | || | ||||||| Sbjct 94727 TCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATTGTTTTGC 94668 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || |||||||| ||||| ||||| Sbjct 94667 CAGTAAGGGTTTTTACAAAAATTTGCAT 94640 >seq7329 Length=619131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526 |||||||| || |||||| | || || || || |||| || ||| ||||||| || ||| Sbjct 336636 GGCCTGCATGGATTCCACATTCATGAATTCGGGGACAACACCAATGGCTGCATATCAGCC 336577 Query 116527 GGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAAC-GCCGCCGTTCGTCA 116585 || || |||||||||| || | |||| || || | ||||||| | ||| | ||||| Sbjct 336576 GGGCCCCATTTCAACCCCAACGACAAGGAACATGGAG-GCCCAACTGACGCTGACCGTCA 336518 Query 116586 CGTCGGTGACCTGGGCAACATTGAGGCCAA 116615 | || || | || |||||||||||||| Sbjct 336517 TGCTGGAGATTTAGGAAACATTGAGGCCAA 336488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483371321881120