Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7343 93.3 1e-13 seq6414 91.5 3e-13 seq7387 87.8 4e-12 >seq7343 Length=933009 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTAT 131916 ||| | || ||||| || ||| ||||| ||||| || || || ||||| | | || Sbjct 374833 AGAATCGTCGCTTTCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTT-CGAT 374891 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 ||| ||||||||||| || || |||||||| || || |||| || ||| || | ||||| Sbjct 374892 CTTCTGGCTTAAGAAACGCGGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTC 374951 Query 131977 GAGAGATGAAGCATTGCATACTGAATTTGC 132006 ||||| |||| ||||||| ||| ||||| Sbjct 374952 CAGAGACGAAGGATTGCATTGTGACTTTGC 374981 >seq6414 Length=500544 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||| ||| ||||| || | || ||||| || ||||||||| | || || Sbjct 138361 GATATCGTTGAAAGACACCTGCACGATGATGATATAGTCCTGTTCAATCGACAGCCTAGT 138302 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATT-ATCTGGATTGACATTTCG 305412 | |||||| | || || |||||||||| ||||||||| | | | ||| ||||| Sbjct 138301 TTACATAAACTATCAATTATGGCTCATAGAGTCAAAGTGCACAACCACAG-GACTTTTCG 138243 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 ||| || | | ||| ||| | ||||| ||||| ||||||||||| |||||||||||| | Sbjct 138242 ATTCAACGAATGTGTTTGCAACCCTTACAATGCTGATTTTGATGGTGATGAAATGAATCT 138183 Query 305473 GCATGTACCTCA 305484 || |||| || Sbjct 138182 TCACTTACCGCA 138171 >seq7387 Length=2571978 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 305329 GGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAA 305388 |||| | |||||| | || || | || ||||| ||| |||||||||||||| || || Sbjct 627266 GGTTATTTTCAATCGTCAGCCCACTCTACATAAGATGAGTATGATGGCTCATAGGGTTAA 627207 Query 305389 AGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGC 305445 ||| || | | | || || ||| | ||| | || |||| ||| ||||||||||| Sbjct 627206 GGTACTACCCTGGTCTACTTTCCGAATGAATTT--GT-CTTGCACGTCACCTTATAATGC 627150 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || || || ||||||||| | |||||| ||||| Sbjct 627149 CGATTTCGACGGCGACGAAATGAATCTCCATGTAGCTCAA 627110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186688292952668