Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6955 154 3e-32 seq6233 96.9 8e-15 seq1586 96.9 8e-15 seq7453 95.1 3e-14 seq7010 87.8 4e-12 seq5761 86.0 1e-11 >seq6955 Length=469295 Score = 154 bits (170), Expect = 3e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||||||||||||| ||| |||||| |||| Sbjct 94199 AAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCAGACACAATCGAGAAT 94258 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || ||||||||||| || ||| || | || || ||| Sbjct 94259 GTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAGCAGCGTCTCATTTTC 94318 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| |||||||||||| | ||| | |||| |||||| |||||||||||||| Sbjct 94319 GCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAACATCCAGAAAGAGTCT 94378 Query 206365 ACTCTTCACCTTGTTTTG 206382 ||||||||| | |||||| Sbjct 94379 ACTCTTCACTTGGTTTTG 94396 Score = 123 bits (136), Expect = 6e-23 Identities = 148/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| || || |||||||| || || | ||||| || |||||| || | Sbjct 95104 TTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTCTGATACTAT 95163 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| || ||| || || |||||||||||| || ||| || |||| Sbjct 95164 TGAAAATGTTAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCCCCAGACCAACAGAGAC 95222 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||| ||||| || |||||||| || | |||||| | ||||||||| |||||| Sbjct 95223 TGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAACATCCAGA 95282 Query 206357 AAGAGTCTACTCTTCAC 206373 | || || ||||||||| Sbjct 95283 AGGAATCCACTCTTCAC 95299 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || |||||||| ||||||||||||||| || |||||| | || Sbjct 94883 AAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTCAGACACAATTGAGAAC 94942 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || ||| || ||| | ||||| Sbjct 94943 GTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAGAGATTGATCTTT 95002 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||||||||| |||||| | ||||| | || |||||| | || || ||||| Sbjct 95003 GCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAACATTCAAAAGGAGTCC 95062 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||| | || | || |||||| Sbjct 95063 ACTTTGCATTTGGTGTTGAGA 95083 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| || || |||||||| |||||||||||||||||| || ||||| |||| | Sbjct 95567 AAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCAGACACCATCGAGAAT 95626 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||| || || |||||||| ||| || ||| || || | || || Sbjct 95627 GTTAAAGC-TAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGTTGATTTT 95685 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||| || | ||||| | ||||||||| | ||||| || || Sbjct 95686 CGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAACATACAGAAGGAATC 95745 Query 206364 TACTCTTCAC 206373 ||||||||| Sbjct 95746 CACTCTTCAC 95755 Score = 111 bits (122), Expect = 4e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG-AATC 206243 ||||| || || |||||||| |||||||||||||||||| || || || ||| || | Sbjct 95339 AAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTCAGATACCATCGAAAAC 95398 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||| ||||| || ||||| || || ||| || | || ||||| Sbjct 95399 GTTAAAGC-TAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTCATCTT 95457 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||||||||| ||||| | || | |||| |||||| |||| || || || Sbjct 95458 TGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATC 95517 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 95518 CACCCTTCAC 95527 Score = 109 bits (120), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || | ||||| ||| ||||| || | ||| Sbjct 94655 AAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATCTGATACCATTGAAAAT 94714 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || || ||||||||| || ||| || || | || || Sbjct 94715 GTTAAAGCCAA-GATTCAGGACAAGGAAGGAATTCCTCCAGACCAACAGAGGTTAATTTT 94773 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || ||||| ||||||||| | || ||| | || |||||| |||||||||| || Sbjct 94774 TGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAACATCCAGAAAGAATC 94833 Query 206364 TACTCTTCACCTTGTTTTGAGACT 206387 ||| | || | ||||||||||| Sbjct 94834 CACTTTACATTTGGTTTTGAGACT 94857 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || | ||||| ||| ||||| Sbjct 95783 CAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATCTGAT 95842 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||| || || || ||||||||| || ||| || Sbjct 95843 ACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCAACAG 95902 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| || || || ||||||||||| | || | | ||||| ||| || Sbjct 95903 AGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAACATC 95962 Query 206353 CAGAAAGAGTCTACT 206367 || ||||| || ||| Sbjct 95963 CAAAAAGAATCCACT 95977 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATCAGTAAAGCA 206252 || || ||||| ||||| | || || ||| || ||||| | || | | |||||| Sbjct 94436 ACTGGCAAAACTATCACACTTGAGGTTGAACCATCAGACACTATTGAGAACGTTAAAGCC 94495 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| || ||||||||| || ||| ||| || | || ||||| || || Sbjct 94496 AA-GATTCAAGACAAGGAAGGAATTCCCCCAGACCAACAACGATTGATTTTCGCTGGCAA 94554 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||||||| | || | | ||||| ||| |||| ||||| || ||||| || Sbjct 94555 ACAGTTGGAAGATGGCCGCACCCTATCAGATTATAACATCCAAAAAGAATCCACTCTGCA 94614 Query 206373 CCTTGTTTTGAGA 206385 | || |||||| Sbjct 94615 TTTGGTGTTGAGA 94627 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 |||||| | ||||||||||||||||||||||| || ||||| | | ||| | |||||| Sbjct 94396 CAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATC 94337 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| |||||||| ||||| || || || || || Sbjct 94336 TTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTG 94301 >seq6233 Length=1575 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 ||||| || | || | ||| ||||| ||||||| |||||||| | |||||| | |||| Sbjct 628 CTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCA 569 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| ||||||||||| ||||| || || Sbjct 568 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTG 531 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || || ||||| Sbjct 429 AAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCAGATACCATCGAAAAT 488 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || ||||| || || || ||| || | || ||||| Sbjct 489 GTTAAAGCCAAA-ATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCAGCGGCTGATCTT 547 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| ||||||||||| | |||||| | || || ||| ||||||| ||||| Sbjct 548 CGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAACATCCAGAAGGAGTC 607 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 ||| | || | || ||||| Sbjct 608 CACTTTGCATTTGGTGTTGAG 628 >seq1586 Length=2413 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 ||||| || | || | ||| ||||| ||||||| |||||||| | |||||| | |||| Sbjct 2066 CTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCA 2007 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| ||||||||||| ||||| || || Sbjct 2006 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTG 1969 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || || ||||| Sbjct 1867 AAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCAGATACCATCGAAAAT 1926 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || ||||| || || || ||| || | || ||||| Sbjct 1927 GTTAAAGCCAAA-ATCCAGGACAAAGAGGGCATCCCTCCCGACCAGCAGCGGCTGATCTT 1985 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| ||||||||||| | |||||| | || || ||| ||||||| ||||| Sbjct 1986 CGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAACATCCAGAAGGAGTC 2045 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 ||| | || | || ||||| Sbjct 2046 CACTTTGCATTTGGTGTTGAG 2066 >seq7453 Length=213858 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || || ||||| Sbjct 107875 AAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCATCAGATACTATCGAAAAT 107816 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || ||||| || || || ||| || | || ||||| Sbjct 107815 GTTAAAGCCAAA-ATCCAGGATAAAGAGGGCATCCCTCCCGACCAGCAGCGGCTGATCTT 107757 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| ||||||||||| | |||||| | || |||||| ||||||| ||||| Sbjct 107756 CGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAACATCCAGAAGGAGTC 107697 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 ||| | || | || ||||| Sbjct 107696 CACTTTGCATTTGGTGTTGAG 107676 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 ||||| || | || | ||| ||||| ||||||| || ||||| | |||||| | |||| Sbjct 107676 CTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCA 107735 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| ||||||||||| ||||| || || Sbjct 107736 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTG 107773 >seq7010 Length=35453 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || || ||||| ||||| Sbjct 8891 AAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCAGACACCATCGAAAAT 8832 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| ||||| || || ||||| || || || || | | ||||| Sbjct 8831 GTAAAAGCGAAA-ATTCAGGACAAGGAAGGCATACCTCCCGATCAGCAGCGTTTGATCTT 8773 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | || | |||| |||||| ||||||| || || Sbjct 8772 CGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAACATCCAGAAGGAATC 8713 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 8712 CACCCTTCAC 8703 >seq5761 Length=8615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || || ||||| ||||| Sbjct 114 AAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCAGACACCATCGAAAAT 173 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| ||||| || || ||||| || || || || | | ||||| Sbjct 174 GTAAAAGCGAAA-ATTCAGGACAAGGAAGGCATACCTCCCGATCAGCAGCGTTTGATCTT 232 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | || | |||| |||||| ||||||| || || Sbjct 233 CGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAACATCCAGAAGGAATC 292 Query 206364 TACTCTTCA 206372 || ||||| Sbjct 293 CACCCTTCA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181696816657148