Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7149 134 1e-26 seq5761 116 4e-21 seq6955 114 1e-20 seq7010 111 1e-19 seq7453 107 2e-18 >seq7149 Length=218332 Score = 134 bits (148), Expect = 1e-26 Identities = 312/462 (68%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 147166 GCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTT 147225 |||| ||| ||||| | ||| ||||| |||||||| | |||||| || | ||||| Sbjct 123361 GCCAGTTCGCAGCTGGTCTCCAGCGCCCCATAGTACAACGTTTCGAATATCCGCTTGTTC 123302 Query 147226 AGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAA 147285 | | |||||| || ||| ||| | ||||| |||| | | ||||| ||||||| Sbjct 123301 AAAAGGGTCGCATCAGGGCTATCGAAGGGCATTCGCATCAAAATGAAGGCGTCGGCCAGG 123242 Query 147286 CCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-AT 147344 || ||||| || | || ||||| | ||| ||| | ||| || |||| | | Sbjct 123241 CCTTGGATTCCAATCCCTATAGGCCTGTGCCGCATGTTCGAGTTCTTTGC-CTCGATTAC 123183 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404 || || ||| ||||||||||||| | || ||| || ||||| || || | Sbjct 123182 CGGGTAAAAGTTCACGTCAATAATCTTGTCCAAATTCCGCGTGACTACTTTCGTGATGGC 123123 Query 147405 TTTGAGTTTCTCGAAATCATAAGTC--CCG-TCTTCG-ACACGTACGCATTGGTTCACGG 147460 || | |||||||| ||| || || ||| || || | || || || ||| || | Sbjct 123122 CTTTAACTTCTCGAAGTCAAAACTCTTCCGATCAGCGGATACAAAC--AT--GTTAACCG 123067 Query 147461 CGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGG 147520 | | || ||||||||||| ||||| | || ||||| |||| | |||||||| | Sbjct 123066 CCACTGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCG 123007 Query 147521 CGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACG 147580 ||| || ||||||| ||||| |||| || | ||| ||| ||| || ||||| | Sbjct 123006 TGCAAAGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGG 122947 Query 147581 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 |||||||| | |||||||| || ||||| || ||||||| Sbjct 122946 CGTCTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTGCG 122905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 198/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 148107 CGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCA--AGCAAAAAACACGAACACATT 148164 |||||||||||| || |||||||| | | | || |||| || || || | | | Sbjct 122243 CGTGTAGATGCCCTCAATGCTGTC--ATCGGGCATCATCAGCAGGAAGCAGGAGGATAGT 122186 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 || || | |||| | || ||| || |||||||| |||||||| || || || | Sbjct 122185 TGAGGTCTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCT 122126 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | | || || || || || || || || || || || ||||||| | | Sbjct 122125 GACATGAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAG 122066 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 || | ||| | ||||||||| || | ||| ||| | ||||||||| |||||||| Sbjct 122065 ACCCTCATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATAC 122006 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAA 148398 | || ||||||||| | |||||||| ||||| |||||| | |||||| Sbjct 122005 GACCTCTCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAA 121952 >seq5761 Length=8615 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | || || || || |||||||||||| | |||||| |||||| Sbjct 307 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCC 248 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| ||||| | |||| | |||||| ||||| |||||||||||||| || || | Sbjct 247 AACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGA 188 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | || || | ||||| || || | || | || ||| Sbjct 187 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 128 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||| ||||| Sbjct 127 CCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq6955 Length=469295 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||||| | || ||||| || ||||||||||| || ||||| ||| Sbjct 94852 CAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCATC 94793 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||| |||| | | |||| | |||||| |||||||| || ||||| || || Sbjct 94792 TTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTC 94733 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||| | | ||| | ||||| | || || ||||| | || | || Sbjct 94732 CTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATTGT 94673 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| ||||| || ||||||| ||||| ||||| Sbjct 94672 TTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| |||||||||||| | || || ||| || Sbjct 95532 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCC 95473 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| |||||||| || ||||| || |||||||| || || Sbjct 95472 AACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 95413 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | ||||| | | |||||||| | || | ||||| Sbjct 95412 ATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTT 95353 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | || || ||||| Sbjct 95352 CCAGTCAGGGTTTTAACAAAGATTTGCAT 95324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | |||||||| || |||||||||||| | || || | Sbjct 94398 CGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCA 94339 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | | || |||||||| || ||||| || || |||||||| Sbjct 94338 TCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTG 94279 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | || || | || |||||||| | || | Sbjct 94278 TCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATG 94219 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| | ||||| | ||| |||||||| Sbjct 94218 GTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 >seq7010 Length=35453 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || || || |||||||||||| | |||||| |||||| Sbjct 8698 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCC 8757 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| ||||| | |||| | |||||| ||||| |||||||||||||| || || | Sbjct 8758 AACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGA 8817 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | || || | ||||| || || | || | || ||| Sbjct 8818 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 8877 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||| ||||| Sbjct 8878 CCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq7453 Length=213858 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| |||||||| | | ||||| || || ||||||||||| || || || Sbjct 107672 CAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCG 107731 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| |||| || ||||| || || ||||| ||||| || Sbjct 107732 TCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTC 107791 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||||| ||| | | ||| | |||||| | ||||| || || | || Sbjct 107792 TTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGT 107851 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || |||||||| || | ||| |||||||| Sbjct 107852 GATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476562418843680