Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7643 96.9 1e-16 seq6985 96.9 1e-16 seq7641 95.1 4e-16 >seq7643 Length=897799 Score = 96.9 bits (106), Expect = 1e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 2763 TTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 || || || ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 532351 TTCATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 532410 Query 2823 TCAACCCCGGGCTTCAGC 2840 || | ||| || ||| || Sbjct 532411 TCGATCCCTGGTTTCGGC 532428 >seq6985 Length=1024054 Score = 96.9 bits (106), Expect = 1e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 87609 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 87550 Query 2825 AACCCCGGGCTTCAGC 2840 | ||| || ||| || Sbjct 87549 GATCCCTGGTTTCGGC 87534 >seq7641 Length=1756407 Score = 95.1 bits (104), Expect = 4e-16 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1473135 TATGTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 1473076 Query 2824 CAACCCCGGGCTTCAGC 2840 | | ||| || ||| || Sbjct 1473075 CGATCCCTGGTTTCGGC 1473059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848180569260