Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6955 102 7e-17 seq5761 98.7 9e-16 seq7453 93.3 4e-14 seq7010 93.3 4e-14 seq7343 89.7 5e-13 >seq6955 Length=469295 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || |||||| | ||||| | ||||| ||| || Sbjct 95552 ATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCA 95611 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| || || || ||||| || || || || || ||| Sbjct 95612 GACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 95671 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || ||||||||| | ||||| | | | | | |||||||| Sbjct 95672 CAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAAC 95731 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || |||||||| |||| || ||| | || ||||||||||||| Sbjct 95732 ATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGGAA 95780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || || || ||| | ||||| | || || ||| ||| | Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAA-CCATC 94470 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | || ||| || ||| || || || || || || || || || Sbjct 94471 AGACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 94530 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| || | |||| || |||||||| | ||||||| | | | |||| |||| Sbjct 94531 ACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAG--ATTAT 94588 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || |||||||||||||| | ||||| ||||| ||||||||||| |||| Sbjct 94589 AACATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGAA 94640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | || || | ||||||||| ||| | Sbjct 94640 ATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAA-CCATC 94698 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| || ||| || || || || || || || || || Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 94758 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 || || | |||| | ||||||||| | ||||||| | | |||| || ||| Sbjct 94759 ACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTC--TGACTAC 94816 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || ||||||||||| | ||||| || || ||| |||||||||||| Sbjct 94817 AACATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGGAA 94868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||| ||||| | || || ||||||||||| |||||| | ||||| | ||||| ||| Sbjct 94178 AACAGGATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAA 94237 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 | || || |||||| | || || ||||| || ||||| || || || || Sbjct 94238 CCTTCAGACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCA 94297 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 || ||||| | ||||||| || || || ||| | ||||||| | | | | ||| Sbjct 94298 GACCAGCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGAC 94357 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || ||||| || || |||| || || || | |||||||||| Sbjct 94358 TACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || |||||| | ||||| | ||||| |||||| Sbjct 95324 ATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTCA 95383 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || || || || || || || || || || ||| Sbjct 95384 GATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 95443 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | | || || || | || |||| | | | ||| ||||| Sbjct 95444 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAAC 95503 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| ||||||||| |||| || ||| | || |||||||||||| Sbjct 95504 ATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGGCTGAGAGGAGGAA 95552 >seq5761 Length=8615 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | ||||| | || ||||| |||| | Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCCATC 157 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | |||||| |||||| || || || || ||||| |||||||| Sbjct 158 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 217 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || || | ||||||| | | | ||| ||||| Sbjct 218 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 277 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| ||||||| ||| | |||||||||||||| Sbjct 278 CATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGG 325 >seq7453 Length=213858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || || | ||||| | || ||||| |||| | Sbjct 107890 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGA-GCCATC 107832 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || ||| ||||| ||||||||||| || || ||||| || Sbjct 107831 AGATACTATCGAAAATGTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACCA 107772 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | || |||||| || || ||||||| | | | | || ||||| Sbjct 107771 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAA 107712 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 107711 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGG 107664 >seq7010 Length=35453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | ||||| | || ||||| |||| | Sbjct 8906 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCCATC 8848 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | |||||| |||||| || || || || ||||| |||||||| Sbjct 8847 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 8788 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || || | ||||||| | | | ||| ||||| Sbjct 8787 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 8728 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| |||| || ||| | |||||||||||||| Sbjct 8727 CATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGG 8680 >seq7343 Length=933009 Score = 89.7 bits (98), Expect = 5e-13 Identities = 310/473 (66%), Gaps = 28/473 (6%) Strand=Plus/Minus Query 110032 CTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATT 110091 || ||||||||| || ||||||||||| || || |||||||| |||||| | Sbjct 375273 CTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGATATTATCGA 375214 Query 110092 CATAAACTCGAAAGGAT---TGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAG 110148 |||||| ||||| |||| ||||| ||| | || || | || | ||| | ||| Sbjct 375213 CATAAAATCGAACGGATTAGTGACA---TTATAAACCTTTTCACAACCGAGTTCCATTAG 375157 Query 110149 CAATCGATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACAT 110208 || ||| || ||||||||||| || |||| ||||||| || |||||| || | | Sbjct 375156 CAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATCCCGATAAG 375097 Query 110209 GGCAACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAA-CA 110267 ||| || || || | | ||| |||| ||| || | || || ||| |||| | Sbjct 375096 ACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCT-CGAATAA 375038 Query 110268 TACTCAACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGA 110327 | | | || || |||| || || ||| || | ||| | |||||| | Sbjct 375037 TGCCCGTCA-CTCTTTCTT-TGGAG--GGTTTTTGAACGAGATA---GGAGAATAGTAAA 374985 Query 110328 GGCAGGCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCA 110387 |||||||| ||| || |||||||| ||||| || || ||||| || |||||| Sbjct 374984 --CAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCA 374927 Query 110388 AACCGGG--TAGAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCC- 110444 ||||| | |||| | ||| || | || |||| | ||||| || || Sbjct 374926 GGCCGGGCATCAAGCCGCGTTT-------CTTAAGCCAGAAGATCGAAGCAAAGCTGCCA 374874 Query 110445 -GGAAAAATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGT 110496 |||||||| ||||||||| ||| |||||||| || | ||| ||||||| Sbjct 374873 GAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGT 374821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445048844588160