Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4314 118 1e-21 seq5491 102 1e-16 seq4315 102 1e-16 >seq4314 Length=7604 Score = 118 bits (130), Expect = 1e-21 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||| | |||||| |||||||| | ||||||||| ||||| || || |||||||| ||| Sbjct 1798 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 1857 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || ||| | || || || |||| |||||||| || ||||| | || |||||||||| | Sbjct 1858 ATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACT-G 1916 Query 147118 CACAGGA-TGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 |||| || || || || |||| ||||| | || | ||| | |||||||| || Sbjct 1917 CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCAAGC 1973 >seq5491 Length=7586 Score = 102 bits (112), Expect = 1e-16 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||| | |||||| |||||||| | ||||||||| ||||| || || |||||||| ||| Sbjct 5789 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 5730 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || || || || || |||| |||||||| || ||||| | || |||||||||| | Sbjct 5729 ATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACT-G 5671 Query 147118 CAC-AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 ||| ||| || || || ||| ||||| | || | || | | |||||||| || Sbjct 5670 CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGC 5615 >seq4315 Length=6298 Score = 102 bits (112), Expect = 1e-16 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||| | |||||| |||||||| | ||||||||| ||||| || || |||||||| ||| Sbjct 2421 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 2362 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || || || || || |||| |||||||| || ||||| | || |||||||||| | Sbjct 2361 ATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACT-G 2303 Query 147118 CAC-AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 ||| ||| || || || ||| ||||| | || | || | | |||||||| || Sbjct 2302 CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGC 2247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583428280003200