Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7343 172 8e-37 >seq7343 Length=933009 Score = 172 bits (190), Expect = 8e-37 Identities = 383/563 (68%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTA-CCAGCG 1455774 ||||||||||| | || ||||| | || |||||| | |||||||| | || |||| Sbjct 374371 GAGCCGCTGCTTAGGGAAAACCCCAGACGGTTTGTCATCTTCCCCATTCAATATCCAGAC 374430 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||||||| |||| | |||| | || ||||| ||||||||| | || || || |||| Sbjct 374431 -ATCTGGGAAAAGTACAAGAAAG-CGGAAGCCTCGTTTTGGACCACGGAAGAAGTGGACC 374488 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | || ||| ||||| || | || | || ||||| || Sbjct 374489 TATCTCAAGACCTCGATCATTGGAATAAGCTGACAAACAATGAAAGGCACTTCATATCGC 374548 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 | || || |||||||| ||| || |||||||| ||| ||| || || | | || Sbjct 374549 ATGTGCTGGCCTTTTT-CGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGA 374607 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || | | || || ||| | | ||||| | | || || ||||| || || |||||| Sbjct 374608 TTCAGCCAGGAAGTGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATC 374667 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 ||||| || |||||||||| ||| | ||||| || |||||| ||| || || || Sbjct 374668 GAAAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTT 374727 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||| | | ||| ||| || || || | || | || |||| || || ||| Sbjct 374728 CAGAAAAGTTTCTTGTTTAACGCAATTGAAACACTTCCCTGTGTAAGGAGGAAAGCGGAC 374787 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||||| | |||||||||| | | | | || ||| |||| ||| | |||||| | Sbjct 374788 TGGGCGCTTAAGTGGATCAGC-TCCAAGACGTCCACA-TTTGGAGAGAGAATCGTCGCTT 374845 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAG 1456252 | || || ||||| || || |||||||| ||||| || ||| | ||||| ||||| ||| Sbjct 374846 TCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTT-TGCTTCGATCTTCTGGCTTAAG 374904 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||| | |||||||| || Sbjct 374905 AAACGCGGCTTGATGCCCGGCCT 374927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177021452350456