Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6955 138 1e-27 seq7453 127 2e-24 seq6233 127 2e-24 seq1586 127 2e-24 >seq6955 Length=469295 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | || |||||||||||||| || || |||||||||||||||||| || | Sbjct 95096 TTCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 95037 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || |||| |||||| || ||||| ||||| | ||||||||| | | Sbjct 95036 ATAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGG 94977 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || |||||||| |||||| ||| | | | | ||||| | ||||| Sbjct 94976 GAATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCA 94917 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || |||||||| || || ||||||||||| || || ||||||| Sbjct 94916 CTTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATTC 94866 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||||| | |||||| || | || ||||| || ||||||||||| | Sbjct 95780 TTCCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCG 95721 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || |||| |||| || || || || || ||||||| ||||||||| | || Sbjct 95720 ATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAG 95661 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || || |||||| |||||| || | | | | | ||||| | ||||| Sbjct 95660 GAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCA 95601 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| ||||| || |||| |||||||| || || ||||||| Sbjct 95600 CTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATTC 95550 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || |||||||||||||| | || || ||||| ||||| ||||| | Sbjct 94640 TTCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTG 94581 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || |||| ||| || || || || ||||| || || ||||| | | Sbjct 94580 ATAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGG 94521 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 ||| | ||||||| | ||| || |||| | ||| | | ||||| | ||| Sbjct 94520 GAATTCCTTCCTTGT-CTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCA 94462 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 94461 ACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | | ||| | |||||| || | || |||||||| |||||||| |||| Sbjct 95552 TTCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGG 95493 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||| |||||| || ||||| || | ||||||||||| | | Sbjct 95492 AAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGG 95433 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCC 35686 | | || |||||||| |||| || |||| | | || | | || || | |||| Sbjct 95432 GGATGCCTTCCTTGTCTTGGATC-TTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCC 95374 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || |||| ||||| ||||| || ||||||| Sbjct 95373 ACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATTC 95322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 || ||| ||||| || | ||| ||| || || |||||||| |||| | || || | Sbjct 94399 CCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCC 94340 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || |||| ||||| || || || || | ||||||||||| | || | | || || Sbjct 94339 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTT 94280 Query 35641 GTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 |||| ||| || ||| | | | | | ||||| | |||||| |||| ||||| Sbjct 94279 GTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGAT 94220 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| || || || |||||||| || |||||||| |||| Sbjct 94219 GGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCATCCTGT 94179 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| ||||||||||| || || || || |||||||| || | ||| || || | Sbjct 94854 CTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCA 94795 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | ||| || || ||||| || |||| ||| ||||| | ||||| | |||||| Sbjct 94794 TCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTG 94735 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| || | | || | | || || | ||| || || | || || Sbjct 94734 TCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATT 94675 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || || | ||||| ||||| || ||||||| Sbjct 94674 GTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATTC 94638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | ||||| | |||||| || | || ||||| || ||||||||||| | Sbjct 95324 TTCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAG 95265 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| |||| |||| || || || || || |||| | ||| ||||| | | Sbjct 95264 ACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGG 95205 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || |||||| |||||| || | | || | | || || | || | Sbjct 95204 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGA 95145 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | || || ||||| || || | |||||| ||||| || ||||||| Sbjct 95144 CTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATTC 95094 >seq7453 Length=213858 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||||||||||||||| || || |||||| || |||||||| || | ||| || || Sbjct 107673 AACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGT 107732 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || ||||||||||| || || || |||| |||||||||||| | ||| | || ||| Sbjct 107733 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCT 107792 Query 35639 TTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 || ||| ||| ||| || || | | || | | || || | || ||||| | || Sbjct 107793 TTATCCTGGAT-TTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGT 107851 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||||| ||| ||||| || |||||||| Sbjct 107852 GATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq6233 Length=1575 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||||||||||||||| || || |||||| || ||||| || || | ||| || || Sbjct 631 AACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGT 572 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || ||||||||||| || || || |||| |||||||||||| | ||| | || ||| Sbjct 571 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCT 512 Query 35639 TTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 |||||| ||| ||| || || | | || | | || || | || ||||| | || Sbjct 511 TTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGT 453 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||||| ||| ||||| || |||||||| Sbjct 452 GATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||||||||||||||| || || |||||| || ||||| || || | ||| || || Sbjct 2069 AACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGT 2010 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || ||||||||||| || || || |||| |||||||||||| | ||| | || ||| Sbjct 2009 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCT 1950 Query 35639 TTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 |||||| ||| ||| || || | | || | | || || | || ||||| | || Sbjct 1949 TTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGT 1891 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||||| ||| ||||| || |||||||| Sbjct 1890 GATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450747461275040