Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7343 298 8e-76 seq7149 161 1e-34 seq7443 91.5 2e-13 >seq7343 Length=933009 Score = 298 bits (330), Expect = 8e-76 Identities = 604/890 (68%), Gaps = 11/890 (1%) Strand=Plus/Minus Query 39315 TAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 39374 |||| || | ||| |||||||| || || || |||||||| || || ||||| || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 39375 ATG-ATATATTTTC--CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATC 39431 || | ||||| || ||| ||||| ||||||||||| ||||||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 39432 CTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAAT 39491 | | ||| | || || || || |||||||||||||| ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || || |||| || || || |||| |||||||| | |||||| | || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACA 39611 | ||| || || || ||| || | ||| || | | || || | Sbjct 375049 CATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATA 374990 Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 ||| ||||| ||||||||||| | || || ||||| || | ||| || ||||||| Sbjct 374989 GTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATG 374930 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 | || || ||||| | || || || || ||||| || || | |||||| ||||| | Sbjct 374929 TCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGA 374870 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA--TCATT 39789 | || || ||||| || ||||| || || || | ||||||||| || || | || | Sbjct 374869 AAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCC-AAATGTGGACGTCTTG 374811 Query 39790 ATG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | |||||||| | ||||| || |||||| || ||||||| || | |||||| || Sbjct 374810 GAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATT 374751 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || ||||| | || ||| | | || ||| | | || || || || | || || Sbjct 374750 GCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTG 374691 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 |||||||| || || || ||||| || || || ||||| || || |||||||| || || Sbjct 374690 TACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCG 374631 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 || | ||| || || | |||| |||| | | |||||| ||||| || |||||| Sbjct 374630 GTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGAT 374571 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 || || ||||| |||| ||||| || || | |||||| | ||||| |||||| Sbjct 374570 GCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTC 374511 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 || | || || |||| |||| || |||||||| | ||||||||||| || || || Sbjct 374510 CAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCT 374451 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || |||||| | | ||| || || ||||||| || || || || ||||| Sbjct 374450 TTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 161 bits (178), Expect = 1e-34 Identities = 389/582 (67%), Gaps = 9/582 (2%) Strand=Plus/Minus Query 68364 CTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACC 68423 |||||| | || ||||| ||||| || || || || || | | ||| ||||| || Sbjct 124036 CTTATCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCC 123977 Query 68424 GGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGG 68483 ||||||||| || |||| ||||| || ||||| | || | || || | Sbjct 123976 GGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGC 123917 Query 68484 ATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGC 68543 | | || || || |||| ||| ||||| ||||| || || || | ||| || || Sbjct 123916 TTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGC 123857 Query 68544 CATTTTTATAAT-ACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 ||| | | || ||| ||||| | ||||||||| | ||||| | || || | | Sbjct 123856 CATATCGAGGATGACT-TTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGT 123798 Query 68603 CATCTGGAAGGCTCG----TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTG 68658 |||| || | | ||| | ||||| || || || || || ||| | | ||||| Sbjct 123797 CATCAGGGATG-TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTC 123739 Query 68659 ATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATT 68718 ||| || | ||||| | ||| || || || | | || |||||| |||| || | | Sbjct 123738 ATCGTGTCGTCCCACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACT 123679 Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| ||||| || | ||||| ||||||||||| ||||| || || || || || | Sbjct 123678 TGAAACTCCCCGGACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTT 123619 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||||||||| ||||| || ||||| || || ||||| || |||| || ||| | Sbjct 123618 TCGTTATTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGA 123560 Query 68839 -TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897 ||||| | |||||| | |||||| | |||| ||||||||| ||||| | Sbjct 123559 GTTTCTTACGCCATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATCTGT 123500 Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 || | |||| ||| | ||||| || || ||||| | ||| Sbjct 123499 GGGCATGACATCCCACATGTCGTACTGGAGGATTCCTTGACT 123458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 70018 GCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC 70077 ||||| ||||| | || || || | | ||||| ||||| || ||||| || ||||| Sbjct 122146 GCGTGCGTGAAGAACTTCTCTGACATGAAGTTGTAGGTTTCGATTGCTGAATCAATATCT 122087 Query 70078 CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTA 70137 ||| || || | | ||| | ||||||||| ||||| || | ||| || | || Sbjct 122086 TCTCCATGGATGCCCACTGAGACCCTCATCAACATGTGCTGCGGCCTTTCAACAATCTTT 122027 Query 70138 TTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAA 70197 || || |||| || || || | ||||| ||||| || ||||| |||||||| || Sbjct 122026 CCGTTGATCTTCAGAAGATACGACCTCTCCAGGGTTTTGAATCCAAAGTAGTTGTACGAG 121967 Query 70198 AAGTCTCTTTCGTAAATAAT 70217 || |||| ||||||||||| Sbjct 121966 AAATCTCGGTCGTAAATAAT 121947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 ||||| | || || || | ||||| ||||| || | ||| ||||| ||||| |||||| Sbjct 121772 CTAAAGTGCTTCTTCGTCTAGTTGTGCAAATTGGACACGGCAATTCTTGCTGCAAGAATA 121713 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| |||||||| | | | || ||| || || |||||||||| || || || | | Sbjct 121712 GCATAATCAGGATGATCTATGGTCATAGTTGCCGCAGTTTCCGCAGCCAAAGTGTCGAGT 121653 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 |||| || || || || ||||| || | || ||||||| || Sbjct 121652 TCTACTGTAGTTACGCCTGGGTATAGTCCATTGATTACTTTCAAGG 121607 >seq7443 Length=177603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 163021 TTAGAAGGGTTGGTTTTAAAAGATATTAATG-GAATATACGAGCCAGGAAAACGTAGATG 163079 ||||| || |||||||||||||| | |||| | || ||||| || |||||||| || Sbjct 17014 TTAGAGGGTTTGGTTTTAAAAGACA-CAATGAGTATTTACGAACCCGGAAAACGCCTTTG 16956 Query 163080 GCTTAAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGT 163139 ||| ||| | || ||||| || ||| |||| | ||||| ||| ||| ||||| | Sbjct 16955 GCTCAAAGTGAAAAAAGATTATTTGTTTGATGGAGCCATGGCGGACAGTGCGGATTTGAT 16896 Query 163140 AGTACTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGAT 163199 ||| || || || | || || | ||| ||| || || |||||| |||| ||| | || Sbjct 16895 AGTGCTAGGTGCTTGGTACGGTAGTGGACAAAAAGGAGGTATGATGTCTGTGTTTCTCAT 16836 Query 163200 GGGTTGCTA 163208 ||| || || Sbjct 16835 GGGATGTTA 16827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686838494884320