Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7343 275 5e-69 seq4314 145 6e-30 seq5491 129 5e-25 seq4315 129 5e-25 >seq7343 Length=933009 Score = 275 bits (304), Expect = 5e-69 Identities = 617/909 (68%), Gaps = 26/909 (3%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||||| ||||| || |||||||| | || || |||||||||| ||||| ||| Sbjct 374378 TGCTTAGGGAAAACCCCAGACGGTTTGTCATCTTCCCCATTCAATATCCAGACATCTGGG 374437 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 ||| |||||| ||||| | || || |||||||| | |||||||| || | || ||| Sbjct 374438 AAAAGTACAAGAAAGCGGAAGCCTCGTTTTGGACCACGGAAGAAGTGGACCTATCTCAAG 374497 Query 43797 ACTTAGCACATTGGATT--GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | | ||||||| | || | | || || | |||| || || ||||| || | Sbjct 374498 ACCTCGATCATTGGAATAAGC-TGACAAACA-ATGAAAGGCACTTCATATCGCATGTGCT 374555 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 ||| ||||| || || || || || || || |||||| | || || || || Sbjct 374556 GGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGATTCAGCCA 374615 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| ||| || | || || ||||||| |||||||||||||| ||||| |||||||| Sbjct 374616 GGAAGTGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCGAAAATAT 374675 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---TGGGCACGAGAA 44031 ||| || ||||||||||| | ||||| || || ||||||| || || || || || Sbjct 374676 TCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTTCA-GAAAA 374734 Query 44032 GCATCGATTGTTTAATGCGATAGAAACA-GTACCTGCGATTAAACA-TAAAGCAGACTGG 44089 | || |||||||| || || |||||| | |||| | ||| | ||||| |||||| Sbjct 374735 GTTTC--TTGTTTAACGCAATTGAAACACTTCCCTGTG--TAAGGAGGAAAGCGGACTGG 374790 Query 44090 GCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 || ||||| ||||| | || || | | |||||||| || | ||||| || ||| Sbjct 374791 GCGCTTAAGTGGATCAGCTCCAAGACGTCCACATTTGGAGAGAGAATCGTCGCTTTCGCA 374850 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | ||| ||||| || || || || || ||||| | || || ||| | |||||||| Sbjct 374851 GCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGAAACGC 374910 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || |||||||| || |||| ||||||||||| | || | || ||||| || ||| Sbjct 374911 GGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGATTGCAT 374970 Query 44267 TGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA 44326 || || ||||| || || || | ||||| | | | || ||| || || | | Sbjct 374971 TGTGACTTTGCCTGTTTACTATTCTCCTATCTCG--TTCAAAAACCCTCCAAAGAA-AGA 375027 Query 44327 ATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 | || | ||| || ||| ||||| || ||||| || ||| || | ||| | Sbjct 375028 GTGACGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAGTTTCTGTCGGATGCACTG 375087 Query 44387 CCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGC 44445 ||||| | | | || || ||||| || | | ||| ||| || || |||| | || Sbjct 375088 CCTGTTAGTCTTATCGGGATGAACTGCA-AGCTCATGTGCCAGTACATAGAATTTGTGGC 375146 Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505 || || | || ||||||| ||||| || || |||| ||| || ||||| || Sbjct 375147 TGACCGACTGCTAATGGAACTCGGTTGTGAAAAGGTTTATAATGTCACTAATCCGTTCGA 375206 Query 44506 TTTTATG--GAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 ||||||| || |||| || || ||||| || |||||||| ||||| || || Sbjct 375207 TTTTATGTCGATAATA--TCTACAGAGGGCAAGACCAACTTTTTCGAAAAGAAGGTCGGC 375264 Query 44564 GAATATCAG 44572 ||||| ||| Sbjct 375265 GAATACCAG 375273 >seq4314 Length=7604 Score = 145 bits (160), Expect = 6e-30 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41017 TGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTAT 41076 ||||||| |||||||| ||| | | | ||||| ||||| || ||||||| || | Sbjct 1978 TGTGCGCTTGGAACCCGGTAGACATTCCTGAAATGGCTTTGCCCCCCTGTCATT-GTCTT 1920 Query 41077 GT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || |||||||||||| ||||| |||||||| || ||||||||||||||||||| || Sbjct 1919 GTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAGCGGAT 1860 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || ||||| || |||||||| || || || || |||||||| || ||||| || Sbjct 1859 ATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGATCGCC 1800 Query 41196 CACGTTACCAAT 41207 || | |||||| Sbjct 1799 CATATCACCAAT 1788 >seq5491 Length=7586 Score = 129 bits (142), Expect = 5e-25 Identities = 150/196 (77%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 41017 TGTGCGCGTGGAACCCAACGGACGTACATT--TGA--TGGCATTGCCACCTTGTCATTTG 41072 ||||||| |||||||| ||| ||||| ||| |||| |||| || ||||||| Sbjct 5610 TGTGCGCTTGGAACCC---GGAG--ACATTCCTGAAATGGCTTTGCGCCCCTGTCATTGC 5664 Query 41073 TTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGG 41131 | ||| |||||||||||| ||||| |||||||| || |||||||||||||||||| Sbjct 5665 CT-TGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAAC 5723 Query 41132 TGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGAT 41191 || ||||| || ||||| || |||||||| || || || || |||||||| || ||||| Sbjct 5724 CGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGAT 5783 Query 41192 TGCACACGTTACCAAT 41207 || || | |||||| Sbjct 5784 CGCCCATATCACCAAT 5799 >seq4315 Length=6298 Score = 129 bits (142), Expect = 5e-25 Identities = 150/196 (77%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 41017 TGTGCGCGTGGAACCCAACGGACGTACATT--TGA--TGGCATTGCCACCTTGTCATTTG 41072 ||||||| |||||||| ||| ||||| ||| |||| |||| || ||||||| Sbjct 2242 TGTGCGCTTGGAACCC---GGAG--ACATTCCTGAAATGGCTTTGCGCCCCTGTCATTGC 2296 Query 41073 TTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGG 41131 | ||| |||||||||||| ||||| |||||||| || |||||||||||||||||| Sbjct 2297 CT-TGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAAC 2355 Query 41132 TGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGAT 41191 || ||||| || ||||| || |||||||| || || || || |||||||| || ||||| Sbjct 2356 CGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGAT 2415 Query 41192 TGCACACGTTACCAAT 41207 || || | |||||| Sbjct 2416 CGCCCATATCACCAAT 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416337368940