Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7149 93.3 5e-14 >seq7149 Length=218332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 118715 TGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCCGTG 118772 ||| |||||||| || || | | | ||||| || | |||||| || | ||||||||| Sbjct 123062 TGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGA--AGTGTATTCAACGATTTCCGTG 123005 Query 118773 CACAAGTTTG-AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 118831 || ||| ||| ||||| || ||||||| |||||| || || || || ||| || || Sbjct 123004 CA-AAGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGC 122946 Query 118832 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 || ||||| |||||||| |||||||| || ||| ||| || || || ||| ||| Sbjct 122945 GTCTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTGCGAGGCGATAACAGCGCGCCA 122886 Query 118892 GACATCGGCAGCTGGCAC 118909 | || ||||||||| Sbjct 122885 AAGCTCCTGAGCTGGCAC 122868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618371903157280