Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq4314 87.8 1e-12 seq5491 82.4 6e-11 seq4315 82.4 6e-11 >seq4314 Length=7604 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 ||||| || || |||||||| ||||| || ||| || ||||||||||| || || || Sbjct 1792 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 1851 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 || |||||||| | ||||||||||| | || || || |||| | | || ||| Sbjct 1852 AGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 1911 Query 111901 AATTGACAAAGTACATGACAAGGAGGCAATGCCATCCC----ATTCATAAAGGGTCCCCA 111956 || || ||| |||||| || ||||| ||||| | || || |||| ||| Sbjct 1912 AACTGCACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGT-TCCA 1970 Query 111957 TGCACACATGATCATCCTTCT 111977 || ||||| ||||||||||| Sbjct 1971 AGCGCACATAATCATCCTTCT 1991 >seq5491 Length=7586 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/204 (70%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 ||||| || || |||||||| ||||| || ||| || ||||||||||| || || || Sbjct 5795 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 5736 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 || |||||||| ||||||||||| | || || || |||| | | || ||| Sbjct 5735 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 5676 Query 111901 AATTG-ACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCA-TAAAGGGTCC----- 111953 || || |||| | | |||||| || |||| ||||| |||| || | ||| Sbjct 5675 AACTGCACAAGGCA-ATGACAGGGGCGCAAAGCCAT----TTCAGGAATGTCTCCGGGTT 5621 Query 111954 CCATGCACACATGATCATCCTTCT 111977 ||| || ||||| ||||||||||| Sbjct 5620 CCAAGCGCACATAATCATCCTTCT 5597 >seq4315 Length=6298 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/204 (70%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 ||||| || || |||||||| ||||| || ||| || ||||||||||| || || || Sbjct 2427 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 2368 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 || |||||||| ||||||||||| | || || || |||| | | || ||| Sbjct 2367 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 2308 Query 111901 AATTG-ACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCA-TAAAGGGTCC----- 111953 || || |||| | | |||||| || |||| ||||| |||| || | ||| Sbjct 2307 AACTGCACAAGGCA-ATGACAGGGGCGCAAAGCCAT----TTCAGGAATGTCTCCGGGTT 2253 Query 111954 CCATGCACACATGATCATCCTTCT 111977 ||| || ||||| ||||||||||| Sbjct 2252 CCAAGCGCACATAATCATCCTTCT 2229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391906487258644