Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7149 89.7 6e-13 >seq7149 Length=218332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||| ||||| || || || || ||||||||||| ||||| | |||||| Sbjct 123996 GTTCTCAAATAATACATTCCGGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAG 123937 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 ||||| | | || | || || ||| |||||| | ||| |||||||| Sbjct 123936 GACAGAACGCCGTAGCTGGCTTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATA 123877 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGAC-TTTTGCGGAATCTCCCAGATGGT 78368 | || ||||| || || ||||| |||| || ||| ||||||| ||| ||||| | || Sbjct 123876 AATGCGCCGCGATCCGCGGCCATATCGAGGA-TGACTTTTTGCGAAATTTCCCACACCGT 123818 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC 78401 | ||| || ||||||| || || ||||||| Sbjct 123817 CTTGTAGATTGCCTTCAAGTCATCAGGGATGTC 123785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC 19155 ||| | ||| ||| || | || ||| | ||| | || ||||||||||| || || | Sbjct 122036 TGAAAGGCCGCAGCACATGTTGATGAGGGTCTCAGTGGGCATCCATGGAGAAGATATT-- 122093 Query 19156 GCGAGTCCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGC 19211 || || || || || ||| || | ||| ||||||||||||||||||| | | Sbjct 122094 --GATTCAGCAATCGAAACCTACAACTTCATGTCAGAGAAGTTCTTCACGCACGCCAGTC 122151 Query 19212 CGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTA 19271 | || || |||||||||| ||| || || || | || ||| ||||| || | Sbjct 122152 CCACTCTGTTCAACGCCGCCACGCCCAGACCTCAACTATCCTCCTGCTTCCTGCTGATGA 122211 Query 19272 TGAAGGATGACAGCATTGAGGGCATCTAC 19300 || |||||||||||||||||||||||| Sbjct 122212 TGCCCGATGACAGCATTGAGGGCATCTAC 122240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548468658486720