Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6955 165 9e-36 seq5761 161 1e-34 seq7010 159 4e-34 seq6233 150 2e-31 seq1586 150 2e-31 seq7453 141 1e-28 seq7149 91.5 2e-13 >seq6955 Length=469295 Score = 165 bits (182), Expect = 9e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || ||||| |||||||| ||||| || || || Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | ||||| || || ||||||||||| ||||||||||||||||| Sbjct 95839 TGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCA 95898 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||| || || || ||| | || |||| || |||||| |||| ||||| Sbjct 95899 ACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAA 95958 Query 27585 TGTCCAAAAGGAATCCACT 27603 ||||||| ||||||||| Sbjct 95959 CATCCAAAAAGAATCCACT 95977 Score = 161 bits (178), Expect = 1e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || ||||| ||||| || ||||| ||||| || || || Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| |||| | || || || |||||||||||||| ||||||||||||||||| Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 94758 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | |||||||||| || || || | || |||| ||||| | | ||||| || Sbjct 94759 ACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAA 94818 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||||||| | ||| | || ||| Sbjct 94819 CATCCAGAAAGAATCCACTTTACATTTGGTTTTG 94852 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || || || || ||| | || || || | Sbjct 95323 AATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTC 95382 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || ||||| || || |||||||| || || || |||||||| Sbjct 95383 AGATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 95442 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| | ||||||| || || || | ||||| || Sbjct 95443 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAA 95502 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||||||||| ||||| Sbjct 95503 CATCCAAAAGGAATCCACCCTTCA 95526 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || ||||| ||||| || ||||||||||| || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | ||||| ||||| || || | || |||| || |||||| |||| ||||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAAC 94591 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||| ||||||||||| ||| | || ||| Sbjct 94592 ATCCAAAAAGAATCCACTCTGCATTTGGTGTTG 94624 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || ||||| || || || ||||| ||||| || ||| | Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || || || || |||||||| || |||||||| |||||||| Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||| || || || ||| | || || | || || | | || || || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||||||||||||||| Sbjct 95275 CATCCAGAAGGAATCCACTCTTCA 95298 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | || || || || || ||| | || || || | Sbjct 94184 ATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCA 94243 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||||||||| |||||||| || ||||| || ||||||||| Sbjct 94244 GACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 94303 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| |||||| | || |||| || || || | ||||| || Sbjct 94304 CAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAAC 94363 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || || |||||||| | || ||||| || Sbjct 94364 ATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCT 94401 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || | |||||||| || |||||| | || || || | Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||||| || || || |||||||| || ||||| |||||||| Sbjct 94927 AGACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 94986 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || ||||| | ||||||| || || || | ||||| || Sbjct 94987 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAA 95046 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| |||||| | ||| | || ||| Sbjct 95047 CATTCAAAAGGAGTCCACTTTGCATTTGGTGTTG 95080 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || || || ||||| ||| | || || || | Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | || ||||| || |||||||| || || |||||||||||||| Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | ||||| || || || ||| | || || | || || || | || || || Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAA 95730 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | || ||||||||||||||||| Sbjct 95731 CATACAGAAGGAATCCACTCTTCA 95754 >seq5761 Length=8615 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || || || ||||| || || |||||||| ||| || Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCA 158 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || ||||||||||||||||| || || ||||| || ||| Sbjct 159 GACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAG 218 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||||||||| | || |||| ||||||||| | ||||| || Sbjct 219 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAAC 278 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| ||||||||||| |||||| Sbjct 279 ATCCAGAAGGAATCCACCCTTCAT 302 >seq7010 Length=35453 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || || || ||||| || || |||||||| ||| || Sbjct 8906 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCA 8847 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || ||||||||||||||||| || || ||||| || ||| Sbjct 8846 GACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAG 8787 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||||||||| | || |||| ||||||||| | ||||| || Sbjct 8786 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAAC 8727 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||||||||| ||||| Sbjct 8726 ATCCAGAAGGAATCCACCCTTCA 8704 >seq6233 Length=1575 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||||||||||| ||| || Sbjct 414 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCA 473 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || ||||| |||||||| ||||| || ||||| |||||| Sbjct 474 GATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 533 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || | | |||||||| Sbjct 534 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAAC 593 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||||| |||||| | ||| | || ||| Sbjct 594 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTG 626 >seq1586 Length=2413 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||||||||||| ||| || Sbjct 1852 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCA 1911 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || ||||| |||||||| ||||| || ||||| |||||| Sbjct 1912 GATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 1971 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || | | |||||||| Sbjct 1972 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAAC 2031 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||||| |||||| | ||| | || ||| Sbjct 2032 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTG 2064 >seq7453 Length=213858 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| ||| || Sbjct 107890 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCATCA 107831 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || ||||| ||||| || ||||| || ||||| |||||| Sbjct 107830 GATACTATCGAAAATGTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 107771 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || | | ||||| || Sbjct 107770 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAAC 107711 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||||| |||||| | ||| | || ||| Sbjct 107710 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTG 107678 >seq7149 Length=218332 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || ||||||||||| ||||| | || || || || | || |||||||||||||| Sbjct 123061 GAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGTGCAA 123002 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||| ||| || || |||||||| |||||||| || ||| |||||| ||||| Sbjct 123001 AGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGCGTCT 122942 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGA 81065 ||||| |||||| || || ||||| || || || || Sbjct 122941 TTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTGCGA 122904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570252028730560