Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028248.1 Length=136896 Score E Sequences producing significant alignments: (Bits) Value seq2064 109 5e-19 >seq2064 Length=2520 Score = 109 bits (120), Expect = 5e-19 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 29749 AAGCCACCACCACCTTGCCAGTTTACAGACTTAGAAATACCACCTTGATCTTCGCCATCG 29808 || || || ||||||||||| || |||| || ||||||||||| || ||||| Sbjct 593 AAACCGCCTCCACCTTGCCAATTCACAGTAGATGAGATACCACCTTGCTCA---CCATCA 649 Query 29809 ATCACTTTTTCCAAGCGCGGAATAATATGGGTATGACAATGATCACCTAGCTCGATTGAG 29868 || |||||||| | || |||||||||||||| | ||| || || | || || Sbjct 650 ATAACTTTTTCAAGACGAGGAATAATATGGGTCTTTGCATGCTCGCCCATTTCAATCCCA 709 Query 29869 ATCCAGCGTCTTTTCATCTTATGAGCTACAGCAGCAGTAGTTCCCGAACCACCGAATGAA 29928 || |||||||| ||||||| || |||||||| ||||| ||||| |||||| ||| || Sbjct 710 ATATAGCGTCTTCTCATCTTGTGGGCTACAGCTGCAGTTGTTCCTGAACCAAGGAAAGAG 769 Query 29929 TCCAATACCAAATCGCCTT 29947 || | || | ||| |||| Sbjct 770 TCAAGAACAATATCACCTT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437894376922880