Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6955 131 1e-25 seq6233 84.2 1e-11 seq1586 84.2 1e-11 >seq6955 Length=469295 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||||||||| | |||| ||||||||||||||| || || || | || || | || Sbjct 95080 CAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCCATC 95021 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || | || || || ||||| || || | ||| ||||| || || | || |||||||| Sbjct 95020 CTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 94961 Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | |||| || | |||||| | |||||||||| | |||||||||| || |||| Sbjct 94960 TTGGATC-TTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAATCG 94902 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||| |||||||| || || ||||| Sbjct 94901 TTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| |||||| || ||||| |||||||||||||| Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||| || || || || || || |||||||| || || Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| || | ||||||| | ||| |||||| || || Sbjct 94518 ATTCCTTCCTTGTCT-TGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAAC 94460 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || ||||| ||||||||||| Sbjct 94459 CTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 >seq6233 Length=1575 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || || | | |||||||||||| | |||| |||||| || |||||||| || | Sbjct 642 CGCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCG 583 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| || || || ||||| || || | ||||| ||||| || | Sbjct 582 ACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAG 523 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | ||||| ||||| ||| ||| | |||||| | || || ||| ||| Sbjct 522 GGATGCCCTCTTTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCG 464 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | || ||||| || |||||||| Sbjct 463 ACCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || || | | |||||||||||| | |||| |||||| || |||||||| || | Sbjct 2080 CGCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCG 2021 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| || || || ||||| || || | ||||| ||||| || | Sbjct 2020 ACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAG 1961 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | ||||| ||||| ||| ||| | |||||| | || || ||| ||| Sbjct 1960 GGATGCCCTCTTTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCG 1902 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | || ||||| || |||||||| Sbjct 1901 ACCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314698192739804