Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6955 150 2e-31 seq5761 147 2e-30 seq7010 141 8e-29 >seq6955 Length=469295 Score = 150 bits (166), Expect = 2e-31 Identities = 183/247 (74%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| ||||| |||| || ||||| || ||||| || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || ||||||||||| ||||| || || || || ||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| |||||||| |||||||| | ||| | || ||||| ||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAAC 94591 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || ||||| || || || | |||||||| ||| | ||| | ||||| || ||| | | Sbjct 94592 ATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGAAT-GCAA--ATT 94648 Query 27228 TTTGTAA 27234 ||||||| Sbjct 94649 TTTGTAA 94655 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || ||||| | ||||| |||||||| ||||| || Sbjct 94640 ATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATCT 94699 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| ||||| ||||| || || || || ||| Sbjct 94700 GATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAA 94759 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | ||||||||||| || ||||| | || | || || |||||| Sbjct 94760 CAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAAC 94819 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || || || || || ||||||||||||||| Sbjct 94820 ATCCAGAAAGAATCCACTTTACATTTGGTTTTG 94852 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| | |||||||| | |||||| | ||||||||||| || Sbjct 94868 ATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTCA 94927 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| |||||||| || || || || Sbjct 94928 GACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 94987 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||| || | || | || || |||||| Sbjct 94988 CAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAAC 95047 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || || |||||||| ||| | ||| |||| || || Sbjct 95048 ATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGGAAT 95097 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| ||||| || || |||| ||| | ||||||||||| || Sbjct 95552 ATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCA 95611 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || || || |||||||||||||| || || || || Sbjct 95612 GACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 95671 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| |||||||||||||||||| | || | || ||||||||| Sbjct 95672 CAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAAC 95731 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||| || || | || ||||| Sbjct 95732 ATACAGAAGGAATCCACTCTTCACTTGGT 95760 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| ||||| ||||||| |||||||| ||||| || Sbjct 95780 ATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATCT 95839 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| || || ||||| ||||| || || || || ||| Sbjct 95840 GATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCAA 95899 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||||||||||||||| | ||| | || ||||| ||| Sbjct 95900 CAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAAC 95959 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 95960 ATCCAAAAAGAATCCAC 95976 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || || | || ||| | ||||||||||| || Sbjct 94184 ATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCA 94243 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||||| || ||||||||||| || || || || || Sbjct 94244 GACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 94303 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||||||||||| | || ||||||| |||||| Sbjct 94304 CAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAAC 94363 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || || ||||| || | || ||||||||||| Sbjct 94364 ATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCG 94398 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | ||||| |||||||| || || || Sbjct 95096 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTCT 95155 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || || ||||||||||| || || || || ||| Sbjct 95156 GATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAA 95215 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | | || | ||| || ||||||||||||||| | ||| | || || |||||||| Sbjct 95216 CAGAGACTGATTTTCGCAGGAAAACAATTGGAAGAC-GGCCGAACTTTGTCTGATTACAA 95274 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | || ||||| | | ||| | ||||| || Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGAAT 95325 >seq5761 Length=8615 Score = 147 bits (162), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 26966 TAAATTTTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 ||||||| ||| | | |||||| |||| || || || |||||||| || || ||| | Sbjct 75 TAAATTTATTA-TAGAAACGCCACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGAC 133 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 || || ||||| || || || || ||| | || || | || ||| |||||||| || Sbjct 134 CATCACCCTTGAGGTCGAGCCATCAGACACCATCGAAAATGTAAAAGCGAAAATTCAGGA 193 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| ||||||||||| |||||||| |||||||| || | ||| || || || |||||||| Sbjct 194 CAAGGAAGGCATACCTCCCGATCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA 253 Query 27143 CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 | ||| | ||||| |||||||| || ||||| || ||| | |||||||| Sbjct 254 TGGACGTACCCTATCCGACTACAACATCCAGAAGGAATCCACCCTTCATTTGGT 307 >seq7010 Length=35453 Score = 141 bits (156), Expect = 8e-29 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 26966 TAAATTTTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 ||||||| ||| | | |||||| |||| || || || |||||||| || || ||| | Sbjct 8930 TAAATTTATTA-TAGAAACGCCACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGAC 8872 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 || || ||||| || || || || ||| | || || | || ||| |||||||| || Sbjct 8871 CATCACCCTTGAGGTCGAGCCATCAGACACCATCGAAAATGTAAAAGCGAAAATTCAGGA 8812 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| ||||||||||| |||||||| |||||||| || | ||| || || || |||||||| Sbjct 8811 CAAGGAAGGCATACCTCCCGATCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA 8752 Query 27143 CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 | ||| | ||||| |||||||| || ||||| || ||| | || ||||| Sbjct 8751 TGGACGTACCCTATCCGACTACAACATCCAGAAGGAATCCACCCTTCACTTGGT 8698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434873886101760