Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq3023 89.7 2e-13 seq3022 89.7 2e-13 seq3021 89.7 2e-13 >seq3023 Length=6550 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| || Sbjct 1 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTCGCGGCGCTGGAACCTAAATCCAGT 59 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| || Sbjct 234 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTCGCGGCGCTGGAACCTAAATCCAGT 292 >seq3022 Length=1446 Score = 89.7 bits (98), Expect = 2e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 14945 CTTGATTTAGAAGG-TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGG 15003 |||| |||| | | ||||| |||||||||||||||||||||||| ||| |||||||||| Sbjct 101 CTTGCTTTAATATGATGGTGGGGACGGAGAGACTCGAACTCTCACACCTCGCGGCGCTGG 42 Query 15004 AACCTAAATCCTGT 15017 ||||||||||| || Sbjct 41 AACCTAAATCCAGT 28 >seq3021 Length=1014 Score = 89.7 bits (98), Expect = 2e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 14945 CTTGATTTAGAAGG-TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGG 15003 |||| |||| | | ||||| |||||||||||||||||||||||| ||| |||||||||| Sbjct 101 CTTGCTTTAATATGATGGTGGGGACGGAGAGACTCGAACTCTCACACCTCGCGGCGCTGG 42 Query 15004 AACCTAAATCCTGT 15017 ||||||||||| || Sbjct 41 AACCTAAATCCAGT 28 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| || Sbjct 1014 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTCGCGGCGCTGGAACCTAAATCCAGT 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194800257242136