Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq2768 206 3e-48 >seq2768 Length=8677 Score = 206 bits (228), Expect = 3e-48 Identities = 462/697 (66%), Gaps = 17/697 (2%) Strand=Plus/Minus Query 139909 TGATATTGATAATCTTGTATCTCAAAATCATCTACGGTAACCCAGGTTTCAATATCTTCT 139968 |||||||||||| ||| | ||||| ||||||| || ||||| |||||||||||||| Sbjct 1930 TGATATTGATAACCTTCAACTTCAAAGTCATCTAATGTCACCCATGTTTCAATATCTTCA 1871 Query 139969 AAAGATTGAATGTTATCATTAATAATAAGTTTTGGTGCCTCAAATGGCTCTC--TAGAGA 140026 | | || ||| | | || ||| |||||||| || | | || || | | || Sbjct 1870 AGCGTTTTAATTTCAGGGTTGATATGGAGTTTTGGCGCAGGATAAGGTTCACGTTTAAGC 1811 Query 140027 T-ATGTTCTGGAACCAATTTAAGTTGGTCTTCATAGATATGAGCATTTGTAATTTTATGA 140085 | | || | | | || | || || ||||| ||||| ||||| ||| || ||| Sbjct 1810 TGAACATCACGCATGAGTTCTAACTGATCCTCATAAATATGCGCATTCACAATCTTGTGA 1751 Query 140086 AATACACGCCCAAATTTATTGCCGGTAATTTGTGCCATTA-AGCGTAATAAAACATAACA 140144 | | ||| |||| || |||||||| ||||| | ||| ||| | | | || Sbjct 1750 TAAGCCTTTCCAGCCTTATGTCCTGTAATTTGAGCCATCAGAGC-TAACAGAGTAAAAAC 1692 Query 140145 CTGTACCATATTAAAATTTAATCCCAATGGGACATCACATGATCTTTGGTATGAAGTTAA 140204 ||| | ||||||||| ||||| || |||||||| || | ||| |||| ||||| Sbjct 1691 CTGAATTTGGTTAAAATTTTGGCCCAAAGGTACATCACACGAACGTTGTGATGATGTTAA 1632 Query 140205 ATATAATGTGCTATTAACTAAAGAAAAATTATGTGTATGCATACATGGACGCAAACATCC 140264 || | ||| || ||||| || |||| ||||||||||| || || | || || Sbjct 1631 GTAAAGTGTATCCCCTACCAAAGAGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACC 1572 Query 140265 TAAGTCAAATTCACCTGGGTTCCAGAAAGTAATAATTTCTCCACGGTCATCAATACCTTG 140324 | ||||| || |||||||| ||||||| | |||||| ||||| ||||||||||||| Sbjct 1571 CATATCAAACTCCCCTGGGTTATAGAAAGTCAGAATTTCACCACGATCATCAATACCTTT 1512 Query 140325 GCTTAAATTATCATATACTTTTCTTAGTTGGT------------CTACAGAACCATTCCA 140372 | ||| | |||||| | || | || |||| || |||| | ||| Sbjct 1511 TCGTAAGTCATCATAGATCTTACGAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCA 1452 Query 140373 AGAACGTCCTTGGACACCGTAAACACGACCCATATCATCGGGTCCTTTACGATTAGGATT 140432 | || |||||||| ||||| || || ||||||||||| |||||||||| ||| || Sbjct 1451 ATGGCGCCCTTGGACTCCGTATACTCGCCCCATATCATCTTCACCTTTACGATAAGGGTT 1392 Query 140433 ATTTAACCATGATTCGTTNNNnnnnnnnNNNNNNNNCCATGTATTACACCCAATCTCACG 140492 | |||||| | | | || ||| |||||||| ||||| | || Sbjct 1391 AGCTAACCAAGCTCCATTTTCGTTAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCG 1332 Query 140493 AAATTGTGCAGCACTTGAATACCCACGAAGATATCCTAGCAGTTCAGCAATAGCAGCTTT 140552 || || |||||| | ||| ||||| | || |||| || ||||||||||| || || Sbjct 1331 GAACTGAGCAGCATTGTCATATCCACGCAAGTAGCCTAATAGCTCAGCAATAGCTGCCTT 1272 Query 140553 ATAAAAACTTTTACGTGTAGTATCAATAGGAAATTCA 140589 | ||||||| || || ||| | | || |||||| Sbjct 1271 CCAGTAACTTTTTCGGGTCGTAACTAAGGGGAATTCA 1235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518183758463520