Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2768 264 1e-65 >seq2768 Length=8677 Score = 264 bits (292), Expect = 1e-65 Identities = 544/797 (68%), Gaps = 23/797 (3%) Strand=Plus/Plus Query 16886 TGAAGGACAATGGGTTAAAAACGAACGAACTGGAACACAATGTCTGACACTAATCAACGC 16945 |||||| ||||||| |||| || |||||||||| | ||| | || | || || || Sbjct 1148 TGAAGGCGTATGGGTTGAAAATGAGCGAACTGGAAAGCGTTGTTTAACCGTTATTAATGC 1207 Query 16946 CGATTTGGTCTATAATGTCGATCAGAACGAAGTTCCTATGGTAACAACTCGCAAAACATT 17005 ||||| | || | || | ||| ||| | || | || || || || |||| | Sbjct 1208 TGATTTAGAGTACCACGTAGGGGCGAATGAATTCCCCTTAGTTACGACCCGAAAAAG--T 1265 Query 17006 TTATCGC-GGC-GCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAATGCTGCC 17063 | | | ||| ||||||||||| || | || || | || ||||| ||||||||||| Sbjct 1266 TACTGGAAGGCAGCTATTGCTGAGCTATTAGGCTACTTGCGTGGATATGACAATGCTGCT 1325 Query 17064 GATTTTCGAGCCATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAAGCTTGG 17123 | || |||||||| || ||||| || |||||||| || || |||||||| | ||||||| Sbjct 1326 CAGTTCCGAGCCATTGGCTGTAATACTTGGAATGCAAATGCTAACGAAAATGGAGCTTGG 1385 Query 17124 TTGAAGAATCCCAATCGTAAAGGTGAGGACGATATGGGACGAGTGTATGGCGTTCAGGGT 17183 || || || ||||||||||||| || |||||||| ||||| || || || || || Sbjct 1386 TTAGCTAACCCTTATCGTAAAGGTGAAGATGATATGGGGCGAGTATACGGAGTCCAAGGG 1445 Query 17184 CGTCAGTGGACAAACATGTATGGCGATTCACTTGACCAATTGCGCAAAATATACGATAAT 17243 || || ||| ||| | || | ||||||| | || || || || ||| | Sbjct 1446 CGCCATTGGCGTAACTCTGAAGGTAAAGAGTTTGACCAGCTTCGTAAGATCTATGATGAC 1505 Query 17244 CTTCGAAATCGAAAAGATGACCGTGGTGAAATTCTGACTTTCTGGAATCCAGGTGAATTC 17303 | ||||| | | ||||| |||||||||||||||||||||| || ||||| || || Sbjct 1506 TTACGAAAAGGTATTGATGATCGTGGTGAAATTCTGACTTTCTATAACCCAGGGGAGTTT 1565 Query 17304 GAATTCGGATGTCTGCGTCCTTGTATGCACACCCATCAATTCAGTATTCTAGGTGATAAG 17363 || | || || || || ||||||||||| || ||| ||| | | |||| |||| Sbjct 1566 GATATGGGTTGCCTACGACCTTGTATGCATACTCATACCTTCTCTTTGGTAGGGGATACA 1625 Query 17364 CTTTATCTGAACAGTTTTCAGAGAAGT---AACGATCTGCTATTAGGTCAGGTTTTCAAT 17420 ||||| || |||| | ||| | | || ||| | | || || || ||| || Sbjct 1626 CTTTA-CTTAACA-TCATCACA-ACGTTCGTGTGATGTACCTTTGGGCCAAAATTTTAAC 1682 Query 17421 CAGATTCAGTGTTTTGTCT-TGCTCAAACTGATGGCTCAAATTACAGGATTAAAACCTGG 17479 || |||||| ||||| || || | ||||||||||||||||||||| || |||| Sbjct 1683 CAAATTCAG-GTTTTTACTCTGTTAGCTCTGATGGCTCAAATTACAGGACATAAGGCTGG 1741 Query 17480 AAAGGCTTATCATAAAATTGTAAATGTTCACATTTACGATAATCAGTACGAGGTGTTGAT 17539 |||||||||||| || ||||| |||| || ||||| || |||||| || | || Sbjct 1742 AAAGGCTTATCACAAGATTGTGAATGCGCATATTTATGAGGATCAGTTAGA---ACTCAT 1798 Query 17540 GAAGGAAGGACAACTAAACAGAGTTCCATTTAAAGCACCGA----CCATGTGGATTAATC 17595 | || | || || || | | || | | || || | |||| || || | Sbjct 1799 GCGTGATGTTCAGCTTAAACGTGAACCTTATCCTGCGCCAAAACTCCAT----ATCAACC 1854 Query 17596 CAGAAATTAAAACTTTAGAAGATGTTTTAACGTGGGTTACTCCTGATGATTTTGTAGTCG 17655 | ||||||||||| | |||||| || ||| ||||| || ||||| |||| ||| | Sbjct 1855 CTGAAATTAAAACGCTTGAAGATATTGAAACATGGGTGACATTAGATGACTTTGAAGTTG 1914 Query 17656 AAGGCTATGAACATCAT 17672 |||| ||| || ||||| Sbjct 1915 AAGGTTATCAATATCAT 1931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582676356970400