Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028799.1 Length=66708 Score E Sequences producing significant alignments: (Bits) Value seq2768 95.1 5e-15 >seq2768 Length=8677 Score = 95.1 bits (104), Expect = 5e-15 Identities = 215/317 (68%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 12052 GGTATTGATGACAGGGGTGAGATTATTACCTTCTGGAAACCAGATGACTTCGATAAAGCT 12111 ||||||||||| | ||||| ||| | || |||| || |||| || || |||| | | Sbjct 1515 GGTATTGATGATCGTGGTGAAATTCTGACTTTCTATAACCCAGGGGAGTTTGATATGGGT 1574 Query 12112 TGTTTACGTCCTTGTATGTTCCAACATCAT---TTCACTTTGATTGATGACCAACTATCA 12168 || |||| ||||||||| || |||| ||| ||||| | | || ||| | | Sbjct 1575 TGCCTACGACCTTGTATG---CATACTCATACCTTCTCTTTGGTAGGGGATACACT-TTA 1630 Query 12169 CTT-ACTTCGTATCAGCGTAGTTGTGATGTTCCGTTAGGGCTAAACTTTAACATGATTCA 12227 ||| || || | || ||| |||||||| || || || | ||| |||||| ||||| Sbjct 1631 CTTAACATCATCACAACGTTCGTGTGATGTACCTTTGGGCCAAAATTTTAACCAAATTCA 1690 Query 12228 AGTATATGTATTCTTGGTTCTAATGGCTCAGATTACAGGTAATCAACCATTGG--GTGCT 12285 || | | | || | ||| |||||||| |||||||| || | | ||| ||| Sbjct 1691 GGTTTTTACTCTGTTAGCTCTGATGGCTCAAATTACAGGACATAAGGC--TGGAAAGGCT 1748 Query 12286 ACGCACCATATTGTGAATGCTCATATGTATGAAGACCAAGTAGAGCTAATG---GAAGAA 12342 ||| | ||||||||||| ||||| ||||| || || |||| || ||| || | Sbjct 1749 TATCACAAGATTGTGAATGCGCATATTTATGAGGATCAGTTAGAACTCATGCGTGATGTT 1808 Query 12343 CAAGTTAAACGTCAACC 12359 || |||||||| |||| Sbjct 1809 CAGCTTAAACGTGAACC 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 213319510454892