Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_028855.1 Length=44846 Score E Sequences producing significant alignments: (Bits) Value seq8067 152 1e-32 seq4971 89.7 1e-13 >seq8067 Length=1101 Score = 152 bits (168), Expect = 1e-32 Identities = 255/364 (70%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 40555 TTTCAGCAGCACGGCGCTTAACTAAACCTT-CAAGAACTCGACCACCAGCTTTTTTCCAC 40613 |||||||||| ||||| || || | ||||| || | || | ||||| || || ||| Sbjct 616 TTTCAGCAGCCCGGCGATTGACCAGACCTTGCATGCGCTTG-CCACCGGCATTCACCCAT 558 Query 40614 GCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAGAAGTTTGAGTAAAGTT 40673 | || |||| ||| ||| ||| ||||| || | ||| | |||||| ||||| Sbjct 557 ACATCAAACTGATTGGCTGCAGCTTTATAATTTCCTTCATTCAATCGTTTGACCAAAGTG 498 Query 40674 GAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATACTAGAGCGTCAAATTGA 40733 |||||||| || ||| ||| ||||||||||||| |||||| ||||| || || || ||| Sbjct 497 GAATTTTTGAATGCAGTTGATCCAATGTTGTAGGCCAGTGAAACTAGGGCATCGAACTGA 438 Query 40734 TTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTCAAA--CTTAATTAAAT 40791 |||||||| | ||||||||| || | ||||||| | ||||| ||| ||| | Sbjct 437 TTTTGACTGACTGGAACTTTGACTGCACTATTTACAGTCTGCTCAAATGCTT--TTAGGT 380 Query 40792 CATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTATCGCCTTTCTTAACTTTTG 40851 | | | | || | ||| || || || ||| || ||||| ||||| || || | Sbjct 379 CGTTCTGCATATAAGCTTTGGCCTGATCCAGTGTGCAGGTATCCCCTTTTTTGACACGTA 320 Query 40852 TACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGCCAACACCATCATCAT 40911 | ||||| ||||| || || || || || |||||||| || ||||||||||||| Sbjct 319 TGCCATTTGGGTATTTTGTGGTGCCATAACCAATAGTCCATACACCTACACCATCATCAT 260 Query 40912 ATGC 40915 | || Sbjct 259 AGGC 256 >seq4971 Length=6473 Score = 89.7 bits (98), Expect = 1e-13 Identities = 198/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 40620 AATTGATCGGCAGCACCTTGATAATCGCCATTATTAAGAAGTTTGAGTAAAGTTGAATTT 40679 |||||||| || || | | ||||| | ||| || ||||| ||||| || | | Sbjct 5358 AATTGATCAGCTGCCGCCTTATAATTTTTCTCATTCAGCCTTTTGACCAAAGTGGATTCT 5417 Query 40680 TTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATACTAGAGCGTCAAATTGATTTTGA 40739 | ||| || | |||||||| |||| || ||| || | || ||||| ||||| ||| Sbjct 5418 TCAAATGCGGTAGGTCCAATGTTATAGGCCAATGAAACCAAGGCATCAAACTGATTCTGA 5477 Query 40740 CTAAGTGGAACTTTAACAGATTCATTTACAACATTTTCAAACTTAATTAAATCATGTTTG 40799 | | ||||| || || | ||| || | || || || | || ||||||| Sbjct 5478 TTGATCGGAACATTGACTGCGCTATTGACGGTTTGCTCGAATTTTTTCAAGTCATGTTGC 5537 Query 40800 AAGTAGGTTTTTGCTTGTTCAGATGTACATGTATCGCCTTTCTTAACTTTTGTACCATTG 40859 | |||| |||| ||||| || ||| || ||||| ||||| || || ||||||| Sbjct 5538 ATGTAGCTTTTGGCTTGCTCCAGTGTGCAGGTATCCCCTTTTTTGACACGAATACCATTT 5597 Query 40860 GGGTAGACGGTTGTACCTATGCCGATGGTCCATACGCCAACACCATCATCATATGCA 40916 ||||| || || || || ||||||||||| || || |||||||| || ||| Sbjct 5598 GGGTATTTTGTGGTGCCATAACCAATGGTCCATACACCCACGCCATCATCGTAGGCA 5654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143371658259648