Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4314 129 5e-25 seq5491 125 6e-24 seq4315 125 6e-24 >seq4314 Length=7604 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| ||||||||||| |||||||| ||||| || |||||||| || || ||||| | Sbjct 1794 GATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAG 1853 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||| || | |||| |||||| | ||||| ||||| |||||||| || ||||| || Sbjct 1854 CCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAA 1913 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || || || || ||||| | ||||| ||| | || ||||||||| || Sbjct 1914 CTGCACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCAAGC 1973 Query 6796 GCACATCACGATCCTTCTGTC 6816 |||||| | |||||||| || Sbjct 1974 GCACATAATCATCCTTCTATC 1994 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34529 GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCC 34588 || |||||||| | |||||||| ||||||||| || | ||| ||||| | ||| Sbjct 1994 GATAGAAGGATGATTATGTGCGCTTGGAACCCGGTAGACATTCCTGAAATGGCTTTGCCC 1935 Query 34589 CCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTAT 34648 || || || || || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 1934 CCCTGTCATTGTCTTGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTAT 1875 Query 34649 CAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTC 34708 ||| |||| | || |||||| | ||||| || || |||||||| || ||||| |||||| Sbjct 1874 CAAAGATCAGCGGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTC 1815 Query 34709 ACGTACATGATCGCTCATGTC 34729 || ||||||||||| ||| || Sbjct 1814 ACTTACATGATCGCCCATATC 1794 >seq5491 Length=7586 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 34529 GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCC 34588 || |||||||| | |||||||| ||||||||| || | | ||| ||||| | | | Sbjct 5594 GATAGAAGGATGATTATGTGCGCTTGGAACCCGGAG-ACATTCCTGAAATGGCTTTGCGC 5652 Query 34589 CCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTAT 34648 || || || ||| || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 5653 CCCTGTCATTGCCTTGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTAT 5712 Query 34649 CAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTC 34708 ||| |||| || |||||| | ||||| || || |||||||| || ||||| |||||| Sbjct 5713 CAAAGATCAACCGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTC 5772 Query 34709 ACGTACATGATCGCTCATGTC 34729 || ||||||||||| ||| || Sbjct 5773 ACTTACATGATCGCCCATATC 5793 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| ||||||||||| |||||||| ||||| || |||||||| || || ||||| | Sbjct 5793 GATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAG 5734 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||| || |||| |||||| | ||||| ||||| |||||||| || ||||| || Sbjct 5733 CCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAA 5674 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| || || ||| | | ||||| ||| | | || ||||||||| || Sbjct 5673 CTGCACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGC 5615 Query 6796 GCACATCACGATCCTTCTGTC 6816 |||||| | |||||||| || Sbjct 5614 GCACATAATCATCCTTCTATC 5594 >seq4315 Length=6298 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 34529 GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCC 34588 || |||||||| | |||||||| ||||||||| || | | ||| ||||| | | | Sbjct 2226 GATAGAAGGATGATTATGTGCGCTTGGAACCCGGAG-ACATTCCTGAAATGGCTTTGCGC 2284 Query 34589 CCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTAT 34648 || || || ||| || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 2285 CCCTGTCATTGCCTTGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGTGCCAATTGTAT 2344 Query 34649 CAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTC 34708 ||| |||| || |||||| | ||||| || || |||||||| || ||||| |||||| Sbjct 2345 CAAAGATCAACCGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGCTACGCCCTGCTC 2404 Query 34709 ACGTACATGATCGCTCATGTC 34729 || ||||||||||| ||| || Sbjct 2405 ACTTACATGATCGCCCATATC 2425 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| ||||||||||| |||||||| ||||| || |||||||| || || ||||| | Sbjct 2425 GATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAG 2366 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||| || |||| |||||| | ||||| ||||| |||||||| || ||||| || Sbjct 2365 CCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAA 2306 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| || || ||| | | ||||| ||| | | || ||||||||| || Sbjct 2305 CTGCACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGC 2247 Query 6796 GCACATCACGATCCTTCTGTC 6816 |||||| | |||||||| || Sbjct 2246 GCACATAATCATCCTTCTATC 2226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216520343360