Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4314 102 7e-17 seq5491 98.7 8e-16 seq4315 98.7 8e-16 >seq4314 Length=7604 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || || |||||||| || | || ||||||||| | |||||||| || ||||| ||| Sbjct 1798 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 1857 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || |||||||| || ||||||||||| || || ||||| || ||||| |||||||| Sbjct 1858 ATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 1916 >seq5491 Length=7586 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || || |||||||| || | || ||||||||| | |||||||| || ||||| ||| Sbjct 5789 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 5730 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || | |||||| || ||||||||||| || || ||||| || ||||| |||||||| Sbjct 5729 ATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 5671 >seq4315 Length=6298 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || || |||||||| || | || ||||||||| | |||||||| || ||||| ||| Sbjct 2421 TGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCCC 2362 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || | |||||| || ||||||||||| || || ||||| || ||||| |||||||| Sbjct 2361 ATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 2303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414435438842032