Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6955 127 1e-24 seq6233 91.5 1e-13 seq1586 91.5 1e-13 seq7453 87.8 1e-12 >seq6955 Length=469295 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| |||||||| ||| |||||| |||| |||||| | Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| || || ||||| ||||| |||| || Sbjct 94699 TGATACCATTGAAAAT--GTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGAC 94756 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||||||||||||||| ||||| || || || | ||| | ||||| || ||| Sbjct 94757 CAACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTAC 94816 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||||| ||||| |||||| |||||||||||| Sbjct 94817 AACATCCAGAAAGAATCCACTTTACATTTGGTTTTG 94852 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| ||||| ||||| ||| | ||||| ||| ||| ||| |||| || ||| | || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | || || ||| || || ||||| ||||| |||| || | Sbjct 94472 GACACTATTGAGAAC--GTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACC 94529 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || ||||| || || ||||| ||||| || | |||| | | || ||||| | Sbjct 94530 AACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATA 94589 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| |||| |||||||||| ||| | ||| | || || Sbjct 94590 ACATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGG 94638 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || ||||| ||| ||| || | || || ||| | | Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| || ||| || || ||||||||||| |||| || Sbjct 95611 AGACACCATCGAGAAT--GTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGAC 95668 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||| || || ||||||||||| |||| |||| || || |||||| Sbjct 95669 CAGCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTAC 95728 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||| || || || |||| | || ||||| Sbjct 95729 AACATACAGAAGGAATCCACTCTTCACTTGGT 95760 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| |||||||| ||||| ||| ||||||| |||| |||||| | Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || ||| || ||||| ||||| |||| || Sbjct 95839 TGATACCATCGAAAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGAC 95896 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | | ||||| || || ||||||||||| || | |||| | | || ||||| Sbjct 95897 CAACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTAT 95956 Query 27967 AACATCCAAAAAGA 27980 |||||||||||||| Sbjct 95957 AACATCCAAAAAGA 95970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||||||| | || || ||| ||||| | || || ||| | | Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | || || || || ||||| ||||| |||| Sbjct 94927 AGAC-----ACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCA 94981 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| | || || ||||| ||||| || ||||| || | ||||| || || || Sbjct 94982 GACCAGCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGAC 95041 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| ||||||||||||||| ||| | ||| | || || Sbjct 95042 TACAACATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGG 95094 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || ||||| || | ||||| || ||||| |||||||| Sbjct 94277 GACAAAGAAGGAATCCCCCCAGACCAGCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAA 94336 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | ||||| ||||||||||| |||||| ||| | || ||||||||| Sbjct 94337 GATGGACGCACTCTTTCCGACTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTTTG 94396 Query 28003 CG 28004 || Sbjct 94397 CG 94398 >seq6233 Length=1575 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| || || ||||| ||||| || ||||| || || |||| ||||| | || Sbjct 414 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCA 473 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| |||||||| || | || || | Sbjct 474 GATACCATCGAAAAT--GTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACC 531 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || ||||| || || |||| || | ||||| ||||| || || | Sbjct 532 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATA 591 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||| || ||| ||||||||||||||| ||| | ||| | || |||| Sbjct 592 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 642 >seq1586 Length=2413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| || || ||||| ||||| || ||||| || || |||| ||||| | || Sbjct 1852 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCATCA 1911 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| |||||||| || | || || | Sbjct 1912 GATACCATCGAAAAT--GTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACC 1969 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || ||||| || || |||| || | ||||| ||||| || || | Sbjct 1970 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATA 2029 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||| || ||| ||||||||||||||| ||| | ||| | || |||| Sbjct 2030 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 2080 >seq7453 Length=213858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| || || ||||| ||||| || || || || || |||| ||||| | || Sbjct 107890 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCATCA 107831 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| || ||||| || | || || | Sbjct 107830 GATACTATCGAAAAT--GTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACC 107773 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || ||||| || || |||| || | ||||| ||||| || |||| Sbjct 107772 AGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACA 107713 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||| || ||| ||||||||||||||| ||| | ||| | || |||| Sbjct 107712 ACATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 107662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355826888046276