Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6955 179 9e-40 seq6233 172 1e-37 seq1586 172 1e-37 seq7453 159 8e-34 seq7010 156 1e-32 seq5761 150 4e-31 seq7551 89.7 1e-12 >seq6955 Length=469295 Score = 179 bits (198), Expect = 9e-40 Identities = 159/199 (80%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| |||||||||||||||||||| | ||||| | |||||||||| || ||||| Sbjct 95977 AGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCC 95918 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||| || || | |||||||| ||||||| |||||||||||||||||||||| || Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||||||||| ||||| ||| || || || || || || || || || ||||| Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 211097 CTTTACAAACACCTGCATT 211115 || ||||| | ||||||| Sbjct 95797 TTTAACAAAAATCTGCATT 95779 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| |||||||||||||||||||| | ||||| | |||||||||| ||| Sbjct 94614 TGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAACTGT 94555 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || | ||||||||||| || |||| |||||||||||| || ||||| Sbjct 94554 TTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTG 94495 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||| || || ||||| || ||||||||| || ||||| || || || || Sbjct 94494 GCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGTTTTGCCAGTC 94435 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | |||||| Sbjct 94434 AAAGTCTTCACGAAAATCTGCAT 94412 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | |||||| ||||| || ||||||||||| || || | ||| || | Sbjct 95541 AGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 95482 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| |||||| || || ||||| || || || ||||| || || | |||||| Sbjct 95481 CCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 95422 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| |||||||||||||| || ||| ||| || || | |||| Sbjct 95421 TTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTG 95362 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || || || ||||| | |||||| Sbjct 95361 ATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | |||||||||||| || || || ||||| ||||||| | || | || Sbjct 95766 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCG 95707 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| || ||||||||||| || | | || ||||| ||||||| ||||| ||| Sbjct 95706 TCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 95647 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| ||| || || ||||||||||| ||| ||| || || | |||||| Sbjct 95646 TCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATA 95587 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || || || || || | |||||| Sbjct 95586 GTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| |||||||| |||||||| || || | ||| || | ||||||||||| || Sbjct 94387 GTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTG 94328 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || || || ||||| || || | |||||| ||||||||||| || Sbjct 94327 CTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTGGATTTT 94268 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| ||||| || ||| || || | |||||| || ||||| || Sbjct 94267 AGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGT 94208 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | |||||| Sbjct 94207 TAATGTTTTCACGAAGATCTGCAT 94184 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | |||||||||||| || || |||||||| ||||| | | || | || Sbjct 95310 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCG 95251 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| || || |||||||| || || | |||||||| || |||| |||||| ||| Sbjct 95250 TCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 95191 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| ||| || ||||| || || ||||| || || || || || || Sbjct 95190 TCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATG 95131 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || ||||| | |||||| Sbjct 95130 GTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| ||||| |||||||| || || | | || | ||||||||| | ||| ||||| Sbjct 94837 AGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCTAACTGTTTGCC 94778 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | | |||||||| ||||||| ||||||||||||||| ||||| ||| Sbjct 94777 GGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTGGCTTT 94718 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||| ||||| ||||| ||| || || || || || || || || || || || Sbjct 94717 AACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATTGTTTTGCCAGTAAGGGT 94658 Query 211097 CTTTACAAACACCTGCATT 211115 |||||||| | |||||| Sbjct 94657 TTTTACAAAAATTTGCATT 94639 Score = 120 bits (132), Expect = 7e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| ||||| ||||| || || | | || | |||||| |||| |||||| || Sbjct 95065 AGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCCATCCTCCAACTGCTTTCC 95006 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | | || ||||| || |||| ||||||||||| |||||||| || Sbjct 95005 TGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTCGCCTT 94946 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||| || || ||||| ||| ||| || || | ||| ||||| || || || | ||| Sbjct 94945 AACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAATCGTTTTGCCGGTTAAAGT 94886 Query 211097 CTTTACAAACACCTGCATT 211115 || || || | |||||| Sbjct 94885 TTTCACGAAGATTTGCATT 94867 >seq6233 Length=1575 Score = 172 bits (190), Expect = 1e-37 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| || ||||||||||| |||| | || | ||||||||||||||||||||| Sbjct 611 AGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 552 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || || || ||||| ||||| | || || ||||||||||| || ||| Sbjct 551 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTTGGCTTT 492 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||||||||| || || || ||||| |||||||| ||||| ||||| ||||| Sbjct 491 AACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAGT 432 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 431 CTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 172 bits (190), Expect = 1e-37 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| || ||||||||||| |||| | || | ||||||||||||||||||||| Sbjct 2049 AGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 1990 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || || || ||||| ||||| | || || ||||||||||| || ||| Sbjct 1989 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTTGGCTTT 1930 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||||||||| || || || ||||| |||||||| ||||| ||||| ||||| Sbjct 1929 AACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAGT 1870 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 1869 CTTCACGAAGATCTGCAT 1852 >seq7453 Length=213858 Score = 159 bits (176), Expect = 8e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| || |||||||| || |||| | || | ||||||||||||||||||||| Sbjct 107693 AGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 107752 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || || || ||||| ||||| | || || || |||||||| || ||| Sbjct 107753 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATTTTGGCTTT 107812 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || |||||||| || || || || ||||| |||||||| ||||| ||||| ||||| Sbjct 107813 AACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGAGT 107872 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 107873 CTTCACGAAGATCTGCAT 107890 >seq7010 Length=35453 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| ||||| || || |||||||| || || | ||||| | ||| Sbjct 8691 TCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 8750 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| |||||| || |||||||| | || || || || ||||| | |||||||| Sbjct 8751 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 8810 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| || || ||| || |||||||||||||| || || ||||| || ||||| Sbjct 8811 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 8870 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || || | ||||| Sbjct 8871 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq5761 Length=8615 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||| ||||| || || |||||||| || || | ||||| | ||| Sbjct 314 TCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 255 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| |||||| || |||||||| | || || || || ||||| | |||||||| Sbjct 254 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 195 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| || || ||| || |||||||||||||| || || ||||| || ||||| Sbjct 194 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 135 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || || | ||||| Sbjct 134 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7551 Length=105967 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 ||||| ||||||||||||||||| |||||||| ||||||||| | | ||| |||| Sbjct 42733 CCAAAAAAGCACGGAAGAGGAGGTCAATCTGCGTTGCGTTTTGCTCGGTTGAGAATGGAA 42792 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGA 139901 ||| ||||||| ||| |||||||||| || || Sbjct 42793 AAGCGGCACAATTACGTGAGAAAAGTAGCCGA 42824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159030394812620