Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6955 113 4e-20 seq6233 104 2e-17 seq1586 104 2e-17 seq7453 96.9 3e-15 >seq6955 Length=469295 Score = 113 bits (124), Expect = 4e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||| | | | |||||| || || ||| || |||| Sbjct 95565 ACGAAAATTTG--CATTCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTT 95508 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || |||| |||||| || | || || | ||| || || ||||| || |||| Sbjct 95507 GGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGAC 95448 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||||| | ||| | || || ||||| ||| || ||| | | | | | Sbjct 95447 GCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGG 95388 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | ||||| |||| ||||| ||||||| ||||| |||||||||||||||| Sbjct 95387 TATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTT 95328 Query 39281 GCAT 39284 |||| Sbjct 95327 GCAT 95324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || || ||||| || || || |||||| || || || || |||| | Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | || || || || || || |||||||||||||| | ||| Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| |||||| || | || | | || || | ||||| Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| ||||||| || | ||||| || ||||| |||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCATC 94183 >seq6233 Length=1575 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| || || | ||||||||||| | ||| ||| || || || ||||| || | Sbjct 641 GCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGA 582 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || ||| | || || ||||| ||||| || || || || ||||||||||||| || Sbjct 581 CAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 522 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||||| |||||| ||| | | | | ||||| | ||| || Sbjct 521 GATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 462 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || |||||||| || || || ||||| ||||||| Sbjct 461 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATCT 412 >seq1586 Length=2413 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| || || | ||||||||||| | ||| ||| || || || ||||| || | Sbjct 2079 GCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGA 2020 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || ||| | || || ||||| ||||| || || || || ||||||||||||| || Sbjct 2019 CAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 1960 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||||| |||||| ||| | | | | ||||| | ||| || Sbjct 1959 GATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 1900 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || |||||||| || || || ||||| ||||||| Sbjct 1899 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATCT 1850 >seq7453 Length=213858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| || || | ||||||||||| | ||| ||| || || || || || || | Sbjct 107663 GCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGA 107722 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || ||| | || || ||||| ||||| || || || || ||||||||||||| || Sbjct 107723 CAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 107782 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||| ||| |||||| ||| | | | | ||||| | ||| || Sbjct 107783 GATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGAC 107842 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | ||||| | || |||||||| || || || ||||| ||||||| || Sbjct 107843 CTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTCTA 107895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429502735107644