Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6955 159 2e-34 >seq6955 Length=469295 Score = 159 bits (176), Expect = 2e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| || |||||||| |||||| | ||||| || || | Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| ||||| | || | | ||||||||||| | || ||||| | Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGA-TCCAGGACAAAGAAGGCATTCCTCCAGACC 95669 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || || ||||||||| ||||||||| ||||||||| ||||||| Sbjct 95670 AGCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACA 95729 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||| || || ||||| | || || || | |||||| |||||||| Sbjct 95730 ACATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGGA 95779 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || |||||||| || || ||||| || || || ||||| || | | Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||||| | ||||| | || | || ||||| ||||| | || ||||| | Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGA-TTCAGGACAAGGAAGGAATTCCTCCAGACC 94757 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | ||||| |||||||||||||| | ||||| | ||| || || || |||| Sbjct 94758 AACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACA 94817 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||| ||||| |||||||| ||||| || || |||||||| Sbjct 94818 ACATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGGA 94867 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| ||||| || || ||||| | | Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || ||||| | || ||| ||||| ||||| | || ||||| || Sbjct 94472 GACACTATTGAGAACGTTAAAGC-CAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 94530 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || || |||||||| ||||||| | ||||| || ||||| || Sbjct 94531 ACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAA 94590 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| ||||| | ||||| || || || ||| |||| ||| Sbjct 94591 CATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGA 94639 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || |||||||| |||||| | ||||| || | | Sbjct 94184 ATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCA 94243 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | |||| | ||||||||||| | || ||||| || Sbjct 94244 GACACAATCGAGAATGTTAAGGCTAAAA-TCCAGGACAAAGAAGGAATCCCCCCAGACCA 94302 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || ||| ||||||| | ||||||| | ||| ||||| Sbjct 94303 GCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAA 94362 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| || | || || ||||| || || ||||||| Sbjct 94363 CATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| || || |||||||| || || || ||||| || | | Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||||| | ||||| | || | | ||||||||||| | || ||||| | Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGA-TCCAGGACAAAGAAGGAATTCCCCCAGACC 95213 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || || || |||||| ||||||||| || ||||| ||||||| Sbjct 95214 AACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACA 95273 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || || ||||| | || || || | |||||| |||| ||| Sbjct 95274 ACATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGA 95323 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||||||||| || |||||||| |||||| | ||||| || || | Sbjct 95323 AATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTC 95382 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| || || ||||| ||||| | || ||||| || Sbjct 95383 AGATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 95442 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || |||| || | ||||| | ||| ||||| Sbjct 95443 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAA 95502 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || ||||| | || || || | ||| || |||||||| Sbjct 95503 CATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGGCTGAGAGGAGGA 95551 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| |||||||| || || || ||||| || || || ||||| || | | Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | | |||| |||| | ||| || ||||| ||||| | || ||||| | Sbjct 95839 TGATACCATCGAAAATGTTAAGGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCAGACC 95897 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || || ||||||||| ||||||| | ||||| || ||||| | Sbjct 95898 AACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATA 95957 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| |||||||| ||||| Sbjct 95958 ACATCCAAAAAGAATCCAC 95976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337975869599504