Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6955 147 5e-30 seq7010 136 9e-27 seq5761 132 1e-25 seq7453 131 4e-25 seq6983 125 2e-23 >seq6955 Length=469295 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || || | ||| || |||||||| ||||||| ||||| |||| | || | Sbjct 95541 AGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 95482 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | |||||| ||||| ||||| || || || ||||| || || || |||||| Sbjct 95481 CCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 95422 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| || || ||||||||| ||||||| |||||| || || ||| Sbjct 95421 TTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTG 95362 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || |||| ||||| | || | ||||||| Sbjct 95361 ATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || ||||||||||||||||||| || ||||| | | || | || Sbjct 94627 TCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCC 94568 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||| || |||||||| || | |||||||||||| || ||||| |||||||| Sbjct 94567 ATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTT 94508 Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| ||| || |||| | | | || || |||||||| | ||| || || | |||| Sbjct 94507 GTCTTGAATC-TTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGA 94449 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| |||||||| || | ||| | ||||| Sbjct 94448 TAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | |||||| || ||||| | ||||| || | ||||| | || Sbjct 95083 TCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCC 95024 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | |||||| || || ||||| | || || ||||| || ||||| |||||||| Sbjct 95023 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 94964 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || |||||||||| |||||| || || || || Sbjct 94963 GTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAAT 94904 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||| || |||||||| | ||| | ||||||| Sbjct 94903 CGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||||||||||| || ||||| | | || | |||||||| | || || || Sbjct 95977 AGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCC 95918 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||| || |||| |||||||| || ||||| ||||||||||| ||||||||| ||| Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||||||||| || || | ||| || || | || || || ||||| |||| ||| Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | |||||| Sbjct 95797 TTTAACAAAAATCTGCATT 95779 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| ||||||||||| || || | |||||||| | ||||| | || Sbjct 95766 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCG 95707 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| | || || || ||||| || | | || ||||| || ||||| ||||| ||| Sbjct 95706 TCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 95647 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| || ||| |||||||||||||||| |||||| || || ||||| Sbjct 95646 TCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATA 95587 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || |||| ||||| | ||| | ||||||| Sbjct 95586 GTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| || | || | |||||||||||| |||| ||||| || | ||| || | Sbjct 94857 AGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGT 94798 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||| || || || || || | | |||||||| || ||||| |||||| Sbjct 94797 CCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCC 94738 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| || ||| ||| ||||| || || | ||| || || | || Sbjct 94737 TTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTA 94678 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || | ||||||| || | ||||||| Sbjct 94677 ATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| ||||||||||| || |||| |||||||| | |||||||| || Sbjct 95310 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCG 95251 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| | || || || ||||| || |||| |||||||| || ||||| ||||| ||| Sbjct 95250 TCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 95191 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| || ||| ||| || || || || | || || || | || || Sbjct 95190 TCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATG 95131 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || | |||||| | || | ||||||| Sbjct 95130 GTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 >seq7010 Length=35453 Score = 136 bits (150), Expect = 9e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || |||||||| || |||| ||||| |||| | || | || Sbjct 8691 TCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 8750 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | |||||| ||||||||||| | || || || ||||| || || |||||||| Sbjct 8751 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 8810 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||| || || ||| || || ||| ||||||||||||||| | || || || | |||| Sbjct 8811 GTCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGA 8869 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | |||||| | ||| | |||||| Sbjct 8870 TGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq5761 Length=8615 Score = 132 bits (146), Expect = 1e-25 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | || || |||||||| || |||| ||||| |||| | || | || Sbjct 314 TCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 255 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | |||||| ||||||||||| | || || || ||||| || || |||||||| Sbjct 254 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 195 Query 225618 GTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||| || || ||| |||| ||| ||||||||||||||| | || || || | |||| Sbjct 194 GTCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGA 136 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | |||||| | ||| | |||||| Sbjct 135 TGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7453 Length=213858 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || || |||| ||||| || | |||||| | |||||||| |||||||| || Sbjct 107693 AGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 107752 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||||| || || || |||||||| || || || || || || ||||| ||| |||| Sbjct 107753 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGAT-TTTGGCTT 107811 Query 225636 CA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | || |||||| || ||||| | || || || | ||||| ||||||||||||| || Sbjct 107812 TAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGAG 107871 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | ||| | ||||| Sbjct 107872 TCTTCACGAAGATCTGCAT 107890 >seq6983 Length=72405 Score = 125 bits (138), Expect = 2e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| | || || || || ||| |||| ||||| ||| | ||||| Sbjct 25068 CAAATTTATAATACTATTGTAACTGCCCACGCATTTATTATAATTTTTTTTATAGTTATA 25127 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||| ||||| ||||||||||| | || || |||||| Sbjct 25128 CCAATTATAATTGGGGGATTCGGAAACTGATTAATTCCTTTAATGTTAGGGGCACCTGAT 25187 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || || |||||| | | || |||||||| || |||||| |||| ||||| ||| Sbjct 25188 ATAGCCTTTCCACGATTAAATAATATAAGATTCTGATTATTACCCCCTTCATTA 25241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192406093042472