Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4314 111 1e-19 seq5491 98.7 8e-16 seq4315 98.7 8e-16 >seq4314 Length=7604 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 29719 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCC 29778 ||||| || || |||||||| ||||| || | ||||||||| |||||||| || ||||| Sbjct 1791 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 1850 Query 29779 GAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTA 29838 |||||||| ||| |||| || || || | |||||||| || || || | ||||| Sbjct 1851 CAGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 1910 Query 29839 AAACTGACACATGGC-ATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 |||||| |||| | | ||| || || || | ||||| | | |||| ||||||| Sbjct 1911 AAACTG-CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCC 1969 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | || |||| || || | || ||| || ||||| ||||| Sbjct 1970 AAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 2012 >seq5491 Length=7586 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 29719 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCC 29778 ||||| || || |||||||| ||||| || | ||||||||| |||||||| || ||||| Sbjct 5796 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 5737 Query 29779 GAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTA 29838 |||||||| || ||| || || || | |||||||| || || || | ||||| Sbjct 5736 CAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 5677 Query 29839 AAACTGACACATGGC-ATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 |||||| |||| ||| ||| || || | | ||||| | | ||| | ||||||| Sbjct 5676 AAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTC-TCCGGGTTCC 5619 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | || |||| || || | || ||| || ||||| ||||| Sbjct 5618 AAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 5576 >seq4315 Length=6298 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 29719 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCC 29778 ||||| || || |||||||| ||||| || | ||||||||| |||||||| || ||||| Sbjct 2428 GGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCC 2369 Query 29779 GAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTA 29838 |||||||| || ||| || || || | |||||||| || || || | ||||| Sbjct 2368 CAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTA 2309 Query 29839 AAACTGACACATGGC-ATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 |||||| |||| ||| ||| || || | | ||||| | | ||| | ||||||| Sbjct 2308 AAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTC-TCCGGGTTCC 2251 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | || |||| || || | || ||| || ||||| ||||| Sbjct 2250 AAGCGCACATAATCATCCTTCTATCTGTGGGTTTGTTTCTGAT 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406122668466568